YOGY Home YOGY Help

Search term: YNR011C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP2
SGD link S000005294
Alternative ID YNR011C
Description RNA-dependent ATPase in the DEAH-box family, required for activation of the spliceosome before the first transesterification step in RNA splicing
Synonyms YNR011C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0923 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA splicing factor ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g32490 GI:15223221
Arabidopsis thaliana (Ath) At2g35340 GI:15226961
Arabidopsis thaliana (Ath) At4g16680 GI:15235842
Caenorhabditis elegans (Cel) CE15592
(WBGene00003392)		 GI:17531507 O45244
Drosophila melanogaster (Dme) 7298547
(l(2)37Cb)		 GI:19921526
Homo sapiens (Hsa) Hs4503293
(DHX16)		 GI:4503293
Homo sapiens (Hsa) Hs20555648 GI:20555648
Saccharomyces cerevisiae (Sce) YNR011c
(S000005294)		 GI:6324338 P20095
Schizosaccharomyces pombe (Spo) SPBC19C2.01 GI:19112478 Q10752
Encephalitozoon cuniculi (Ecu) ECU10g0680 GI:19074677 Q8SR50
Arabidopsis thaliana (Ath) At1g32490 GI:15223221
Arabidopsis thaliana (Ath) At2g35340 GI:15226961
Arabidopsis thaliana (Ath) At4g16680 GI:15235842
Caenorhabditis elegans (Cel) CE15592
(WBGene00003392)		 GI:17531507 O45244
Drosophila melanogaster (Dme) 7298547
(l(2)37Cb)		 GI:19921526
Homo sapiens (Hsa) Hs4503293
(DHX16)		 GI:4503293
Homo sapiens (Hsa) Hs20555648 GI:20555648
Saccharomyces cerevisiae (Sce) YNR011c
(S000005294)		 GI:6324338 P20095
Schizosaccharomyces pombe (Spo) SPBC19C2.01 GI:19112478 Q10752
Encephalitozoon cuniculi (Ecu) ECU10g0680 GI:19074677 Q8SR50


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt4g16680
GO:0005681 spliceosomal complex C
IC
SpoSPBC19C2.01
ISS
Dmel(2)37Cb
GO:0005682 U5 snRNP C
ISS
SpoSPBC19C2.01
GO:0046540 U4/U6 x U5 tri-snRNP complex C
ISS
SpoSPBC19C2.01
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000005294
IMP
SceS000005294
GO:0071011 precatalytic spliceosome C
IDA
Dmel(2)37Cb
GO:0071013 catalytic step 2 spliceosome C
IDA
Dmel(2)37Cb
GO:0003724 RNA helicase activity F
ISS
AthAt4g16680
Dmel(2)37Cb
TAS
HsaDHX16
GO:0004004 ATP-dependent RNA helicase activity F
ISS
AthAt2g35340
At1g32490
Dmel(2)37Cb
TAS
SpoSPBC19C2.01
GO:0005524 ATP binding F
IC
SpoSPBC19C2.01
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000005294
GO:0000003 reproduction P
IMP
CelWBGene00003392
GO:0000349 generation of catalytic spliceosome for first
transesterification step		 P
IDA
SceS000005294
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
Dmel(2)37Cb
IMP
SpoSPBC19C2.01
ISS
Dmel(2)37Cb
GO:0002119 nematode larval development P
IMP
CelWBGene00003392
GO:0007281 germ cell development P
IMP
CelWBGene00003392
GO:0008380 RNA splicing P
NAS
AthAt1g32490
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003392
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt2g35340
NAS
AthAt1g32490
GO:0010172 embryonic body morphogenesis P
IMP
CelWBGene00003392
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00003392
GO:0035194 posttranscriptional gene silencing by
RNA		 P
IMP
AthAt1g32490
GO:0040007 growth P
IMP
CelWBGene00003392
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003392
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00003392
GO:0040026 positive regulation of vulval development P
IMP
CelWBGene00003392
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003392
GO:0048589 developmental growth P
IMP
CelWBGene00003392

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
2658

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DHX16 GI:4503293
Pan troglodytes (Ptr) DHX16 GI:108860675
Canis familiaris (Cfa) DHX16 GI:73972115
Mus musculus (Mmu) Dhx16
(MGI:1916442)		 GI:30794426 Q05BH3
Rattus norvegicus (Rno) Dhx16
(RGD:1302963)		 GI:47059171
Drosophila melanogaster (Dme) l(2)37Cb GI:19921526
Anopheles gambiae (Aga) AgaP_AGAP009093 GI:158299819
Caenorhabditis elegans (Cel) mog-4
(CE15592;
WBGene00003392)		 GI:17531507 O45244
Saccharomyces cerevisiae (Sce) PRP2
(S000005294)		 GI:6324338 P20095
Kluyveromyces lactis (Kla) KLLA0F06204g GI:50310679
Eremothecium gossypii (Ego) AGOS_ADR287C GI:45188160
Magnaporthe grisea (Mgr) MGG_07501 GI:39972399
Neurospora crassa (Ncr) NCU08928.1 GI:32421753
Arabidopsis thaliana (Ath) ESP3 GI:22329903
Arabidopsis thaliana (Ath) MEE29 GI:145360634
Oryza sativa (Osa) Os08g0335000 GI:115475958


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916442
GO:0005681 spliceosomal complex C
ISS
Dmel(2)37Cb
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000005294
IMP
SceS000005294
GO:0071011 precatalytic spliceosome C
IDA
Dmel(2)37Cb
GO:0071013 catalytic step 2 spliceosome C
IDA
Dmel(2)37Cb
GO:0003674 molecular_function F
ND
MmuMGI:1916442
GO:0003724 RNA helicase activity F
ISS
Dmel(2)37Cb
TAS
HsaDHX16
GO:0004004 ATP-dependent RNA helicase activity F
ISS
AthESP3
MEE29
Dmel(2)37Cb
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000005294
GO:0000003 reproduction P
IMP
CelWBGene00003392
GO:0000349 generation of catalytic spliceosome for first
transesterification step		 P
IDA
SceS000005294
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
Dmel(2)37Cb
ISS
Dmel(2)37Cb
GO:0002119 nematode larval development P
IMP
CelWBGene00003392
GO:0007281 germ cell development P
IMP
CelWBGene00003392
GO:0008150 biological_process P
ND
MmuMGI:1916442
GO:0008380 RNA splicing P
NAS
AthESP3
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003392
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthMEE29
NAS
AthESP3
GO:0010172 embryonic body morphogenesis P
IMP
CelWBGene00003392
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00003392
GO:0035194 posttranscriptional gene silencing by
RNA		 P
IMP
AthESP3
GO:0040007 growth P
IMP
CelWBGene00003392
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003392
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00003392
GO:0040026 positive regulation of vulval development P
IMP
CelWBGene00003392
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003392
GO:0048589 developmental growth P
IMP
CelWBGene00003392

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2177

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11208 ENSANGP00000025250
Ashbya gossypii (Ago) ago2028 ADR287C
Arabidopsis thaliana (Ath) ath3403 At1g32490.1
Arabidopsis thaliana (Ath) ath10588 At2g35340.1
Caenorhabditis elegans (Cel) cel1078 C04H5.6
(CE15592;
WBGene00003392)
Candida glabrata (Cgl) cgl2767 CAGL0I05676g
Cryptococcus neoformans (Cne) cne5367 179.m00219
Dictyostelium discoideum (Ddi) ddi8531 DDB0186761
Debaryomyces hansenii (Dha) dha1057 DEHA0B08459g
Drosophila melanogaster (Dme) dme2943 CG10689-PA
(FBgn0032759)
Danio rerio (Dre) dre27583 ENSDARP00000002154
(dhx16)		 Q7ZVV8
Danio rerio (Dre) dre6496 ENSDARP00000011042
Takifugu rubripes (Fru) fru29799 SINFRUP00000145287
Takifugu rubripes (Fru) fru29800 SINFRUP00000168481
Takifugu rubripes (Fru) fru29801 SINFRUP00000169283
Homo sapiens (Hsa) hsa26771 ENSP00000259877
Kluyveromyces lactis (Kla) kla4361 KLLA0F06204g
Mus musculus (Mmu) mmu11588 ENSMUSP00000025292
(MGI:1916442)		 Q80TX4
Neurospora crassa (Ncr) ncr8701 NCU08928.2
Oryza sativa (Osa) osa26696 3952.m00081
Oryza sativa (Osa) osa57202 6404.m00141
Plasmodium falciparum (Pfa) pfa5088 PFL1525c
Rattus norvegicus (Rno) rno17376 ENSRNOP00000046021
(RGD:1302963)
Rattus norvegicus (Rno) rno17377 ENSRNOP00000049908
(RGD:1302963)
Saccharomyces cerevisiae (Sce) sce5478 YNR011C
(S000005294)
Schizosaccharomyces pombe (Spo) spo2606 SPBC19C2.01 Q10752
Yarrowia lipolytica (Yli) yli3122 YALI0D09955g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916442
GO:0005681 spliceosomal complex C
IC
SpoSPBC19C2.01
ISS
PfaPFL1525c
GO:0005682 U5 snRNP C
ISS
SpoSPBC19C2.01
GO:0046540 U4/U6 x U5 tri-snRNP complex C
ISS
SpoSPBC19C2.01
GO:0071006 U2-type catalytic step 1 spliceosome C
IDA
SceS000005294
IMP
SceS000005294
GO:0003674 molecular_function F
ND
MmuMGI:1916442
GO:0004004 ATP-dependent RNA helicase activity F
ISS
AthAt2g35340
At1g32490
PfaPFL1525c
TAS
SpoSPBC19C2.01
GO:0005524 ATP binding F
IC
SpoSPBC19C2.01
GO:0008186 RNA-dependent ATPase activity F
IDA
SceS000005294
GO:0000003 reproduction P
IMP
CelWBGene00003392
GO:0000349 generation of catalytic spliceosome for first
transesterification step		 P
IDA
SceS000005294
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SpoSPBC19C2.01
GO:0002119 nematode larval development P
IMP
CelWBGene00003392
GO:0007281 germ cell development P
IMP
CelWBGene00003392
GO:0008150 biological_process P
ND
MmuMGI:1916442
GO:0008380 RNA splicing P
ISS
PfaPFL1525c
NAS
AthAt1g32490
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00003392
GO:0009793 embryo development ending in seed
dormancy		 P
IMP
AthAt2g35340
NAS
AthAt1g32490
GO:0010172 embryonic body morphogenesis P
IMP
CelWBGene00003392
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00003392
GO:0035194 posttranscriptional gene silencing by
RNA		 P
IMP
AthAt1g32490
GO:0040007 growth P
IMP
CelWBGene00003392
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003392
GO:0040022 feminization of hermaphroditic
germ-line		 P
IMP
CelWBGene00003392
GO:0040026 positive regulation of vulval development P
IMP
CelWBGene00003392
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003392
GO:0048589 developmental growth P
IMP
CelWBGene00003392
GO:0051726 regulation of cell cycle P
ISS
PfaPFL1525c

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC19C2.01
(Q10752)		 YNR011C
(S000005294)