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Search term: YNR023W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNF12
SGD link S000005306
Alternative ID YNR023W
Description 73 kDa subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; homolog of Rsc6p subunit of the RSC chromatin remodeling complex; deletion mutants are temperature-sensitive
Synonyms YNR023W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2570 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING SWI/SNF transcription activation complex subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g01890 GI:18395975
Arabidopsis thaliana (Ath) At5g14170 GI:15241324
Caenorhabditis elegans (Cel) CE01687
(WBGene00044072)
GI:17557143 Q09646
Caenorhabditis elegans (Cel) CE06078
(WBGene00010523)
GI:17562126 Q21177
Caenorhabditis elegans (Cel) CE08311 GI:17505655
Caenorhabditis elegans (Cel) CE08654_2 GI:17550936
Drosophila melanogaster (Dme) 7292842 GI:7292842
Homo sapiens (Hsa) Hs20070148 GI:20070148
Homo sapiens (Hsa) Hs21264348 GI:21264348
Homo sapiens (Hsa) Hs21264351 GI:21264351
Homo sapiens (Hsa) Hs21264353 GI:14740087
Homo sapiens (Hsa) HsM4507085 GI:4507085
Homo sapiens (Hsa) HsM4507087 GI:4507087
Saccharomyces cerevisiae (Sce) YCR052w
(S000000648)
GI:6319900 P25632
Saccharomyces cerevisiae (Sce) YNR023w
(S000005306)
GI:6324350 P53628
Schizosaccharomyces pombe (Spo) SPAC23G3.10c GI:19114022 Q9P7S3
Encephalitozoon cuniculi (Ecu) ECU04g1200 GI:19074198 Q8SVS5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC23G3.10c
GO:0005634 nucleus C
IDA
SpoSPAC23G3.10c
GO:0005829 cytosol C
IDA
SpoSPAC23G3.10c
GO:0016514 SWI/SNF complex C
IDA
SceS000005306
SpoSPAC23G3.10c
GO:0016585 chromatin remodeling complex C
TAS
SceS000005306
GO:0016586 RSC complex C
IDA
SceS000000648
SpoSPAC23G3.10c
GO:0003674 molecular_function F
ND
AthAt5g14170
At3g01890
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000000648
GO:0016251 general RNA polymerase II transcription factor
activity
F
ISS
SpoSPAC23G3.10c
TAS
SceS000005306
GO:0000003 reproduction P
IMP
CelWBGene00044072
GO:0000086 G2/M transition of mitotic cell
cycle
P
IMP
SceS000000648
GO:0002119 nematode larval development P
IMP
CelWBGene00044072
WBGene00010523
GO:0006337 nucleosome disassembly P
IDA
SceS000000648
GO:0006338 chromatin remodeling P
ISS
SpoSPAC23G3.10c
TAS
SceS000005306
GO:0006354 RNA elongation P
RCA
SceS000000648
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000000648
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IDA
SceS000000648
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00044072
GO:0007413 axonal fasciculation P
IMP
CelWBGene00044072
GO:0008150 biological_process P
ND
AthAt3g01890
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00010523
WBGene00044072
GO:0010171 body morphogenesis P
IMP
CelWBGene00044072
GO:0010551 regulation of gene-specific transcription from RNA
polymerase II promoter
P
IC
SpoSPAC23G3.10c
GO:0040007 growth P
IMP
CelWBGene00010523
WBGene00044072
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00044072
GO:0040011 locomotion P
IMP
CelWBGene00044072
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00044072
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000000648
GO:0045941 positive regulation of transcription P
RCA
SceS000005306
GO:0048364 root development P
IMP
AthAt5g14170

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
68901

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SNF12
(S000005306)
GI:6324350 P53628
Kluyveromyces lactis (Kla) KLLA0C09042g GI:50305285
Eremothecium gossypii (Ego) AGOS_AAR060C GI:45184883


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0016514 SWI/SNF complex C
IDA
SceS000005306
GO:0016585 chromatin remodeling complex C
TAS
SceS000005306
GO:0016251 general RNA polymerase II transcription factor
activity
F
TAS
SceS000005306
GO:0006338 chromatin remodeling P
TAS
SceS000005306
GO:0045941 positive regulation of transcription P
RCA
SceS000005306

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1224

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga15616 ENSANGP00000020546
Anopheles gambiae (Aga) aga749 ENSANGP00000021019
Ashbya gossypii (Ago) ago246 AAR060C
Arabidopsis thaliana (Ath) ath12193 At3g01890.1
Arabidopsis thaliana (Ath) ath23619 At5g14170.1
Caenorhabditis elegans (Cel) cel2410 C18E3.2
(CE30249;
WBGene00015971)
Caenorhabditis elegans (Cel) cel21583 ZK1128.5
(CE01687;
WBGene00044072)
Candida glabrata (Cgl) cgl549 CAGL0C03025g
Candida glabrata (Cgl) cgl5122 CAGL0M10659g
Cryptococcus neoformans (Cne) cne4378 177.m03130
Dictyostelium discoideum (Ddi) ddi1911 DDB0168107
Dictyostelium discoideum (Ddi) ddi2164 DDB0217276
Debaryomyces hansenii (Dha) dha5520 DEHA0F25410g
Drosophila melanogaster (Dme) dme17653 CG4303-PA
(FBgn0025463)
Danio rerio (Dre) dre11380 ENSDARP00000002657
Danio rerio (Dre) dre21804 ENSDARP00000015743
Danio rerio (Dre) dre11379 ENSDARP00000024848
Encephalitozoon cuniculi (Ecu) ecu836 19074198
Takifugu rubripes (Fru) fru19454 SINFRUP00000134998
Takifugu rubripes (Fru) fru19869 SINFRUP00000142552
Takifugu rubripes (Fru) fru19455 SINFRUP00000175167
Gallus gallus (Gga) gga24190 ENSGALP00000010010
(SMARCD1)
Gallus gallus (Gga) gga26178 ENSGALP00000021267
(SMARCD3)
Gallus gallus (Gga) gga26179 ENSGALP00000021268
Homo sapiens (Hsa) hsa7470 ENSP00000228253
(SMARCD2)
Homo sapiens (Hsa) hsa29718 ENSP00000262188
(SMARCD3)
Q6STE5-1
Homo sapiens (Hsa) hsa29719 ENSP00000315550
Homo sapiens (Hsa) hsa29720 ENSP00000349254
(SMARCD3)
Q6STE5-2
Kluyveromyces lactis (Kla) kla1601 KLLA0C09042g
Mus musculus (Mmu) mmu9654 ENSMUSP00000023759
(MGI:1933623)
Q61466-1
Mus musculus (Mmu) mmu19773 ENSMUSP00000030791
(MGI:1914243)
Q6P9Z1
Neurospora crassa (Ncr) ncr3463 NCU03572.2
Oryza sativa (Osa) osa84228 8309.m00125
Rattus norvegicus (Rno) rno20601 ENSRNOP00000013876
(RGD:1311869)
Rattus norvegicus (Rno) rno27755 ENSRNOP00000043205
(RGD:1305406)
Saccharomyces cerevisiae (Sce) sce713 YCR052W
(S000000648)
Saccharomyces cerevisiae (Sce) sce5490 YNR023W
(S000005306)
Schizosaccharomyces pombe (Spo) spo3265 SPAC23G3.10c Q9P7S3
Yarrowia lipolytica (Yli) yli3770 YALI0D25344g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC23G3.10c
GO:0005634 nucleus C
IDA
SpoSPAC23G3.10c
GO:0005829 cytosol C
IDA
SpoSPAC23G3.10c
GO:0016514 SWI/SNF complex C
IDA
SceS000005306
SpoSPAC23G3.10c
GO:0016585 chromatin remodeling complex C
ISS
DmeFBgn0025463
TAS
SceS000005306
GO:0016586 RSC complex C
IDA
SceS000000648
SpoSPAC23G3.10c
GO:0035060 brahma complex C
IDA
DmeFBgn0025463
GO:0071564 npBAF complex C
IDA
MmuMGI:1933623
MGI:1914243
GO:0071565 nBAF complex C
IDA
MmuMGI:1933623
MGI:1914243
GO:0003674 molecular_function F
ND
AthAt5g14170
At3g01890
GO:0003713 transcription coactivator activity F
IC
DmeFBgn0025463
GO:0005515 protein binding F
IPI
Dme<