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Search term: YNR038W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name DBP6
SGD link S000005321
Alternative ID YNR038W
Description Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family
Synonyms YNR038W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0350 ACD-YP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DEAD-box ATP-dependent RNA helicase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g15850 GI:15234726
Caenorhabditis elegans (Cel) CE00456 GI:17557047
Drosophila melanogaster (Dme) 7294064
(FBgn0004556)		 GI:17136666
Saccharomyces cerevisiae (Sce) YNR038w
(S000005321)		 GI:6324366 P53734
Schizosaccharomyces pombe (Spo) SPCC285.03 GI:19075832 Q76PD3
Arabidopsis thaliana (Ath) At4g15850 GI:15234726
Caenorhabditis elegans (Cel) CE00456 GI:17557047
Drosophila melanogaster (Dme) 7294064
(FBgn0004556)		 GI:17136666
Saccharomyces cerevisiae (Sce) YNR038w
(S000005321)		 GI:6324366 P53734
Schizosaccharomyces pombe (Spo) SPCC285.03 GI:19075832 Q76PD3
Arabidopsis thaliana (Ath) At4g15850 GI:15234726
Caenorhabditis elegans (Cel) CE00456 GI:17557047
Drosophila melanogaster (Dme) 7294064
(FBgn0004556)		 GI:17136666
Saccharomyces cerevisiae (Sce) YNR038w
(S000005321)		 GI:6324366 P53734
Schizosaccharomyces pombe (Spo) SPCC285.03 GI:19075832 Q76PD3


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC285.03
GO:0005730 nucleolus C
IDA
SceS000005321
ISS
SpoSPCC285.03
GO:0005829 cytosol C
IDA
SpoSPCC285.03
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000005321
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC285.03
NAS
DmeFBgn0004556
TAS
SceS000005321
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt4g15850
GO:0017151 DEAD/H-box RNA helicase binding F
TAS
AthAt4g15850
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000005321
GO:0006364 rRNA processing P
IMP
SceS000005321
ISS
SpoSPCC285.03

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6850

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DDX51 GI:154759257
Canis familiaris (Cfa) DDX51 GI:73994975
Mus musculus (Mmu) Ddx51
(MGI:1916913)		 GI:40538825 Q6IS54
Rattus norvegicus (Rno) Ddx51 GI:34873019
Gallus gallus (Gga) DDX51 GI:118098682
Drosophila melanogaster (Dme) Dbp73D
(FBgn0004556)		 GI:17136666
Anopheles gambiae (Aga) AgaP_AGAP006941 GI:158286571
Schizosaccharomyces pombe (Spo) SPCC285.03 GI:19075832 Q76PD3
Saccharomyces cerevisiae (Sce) DBP6
(S000005321)		 GI:6324366 P53734
Kluyveromyces lactis (Kla) KLLA0F06941g GI:50310747
Eremothecium gossypii (Ego) AGOS_AGL225C GI:45200872
Magnaporthe grisea (Mgr) MGG_03229 GI:39942298
Neurospora crassa (Ncr) NCU09756.1 GI:32419925
Arabidopsis thaliana (Ath) ATRH1 GI:30683427
Oryza sativa (Osa) Os02g0795900 GI:115449213


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916913
GO:0005634 nucleus C
IDA
SpoSPCC285.03
GO:0005730 nucleolus C
IDA
SceS000005321
ISS
SpoSPCC285.03
GO:0005829 cytosol C
IDA
SpoSPCC285.03
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000005321
GO:0003674 molecular_function F
ND
MmuMGI:1916913
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC285.03
NAS
DmeFBgn0004556
TAS
SceS000005321
GO:0008026 ATP-dependent helicase activity F
ISS
AthATRH1
GO:0017151 DEAD/H-box RNA helicase binding F
TAS
AthATRH1
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000005321
GO:0006364 rRNA processing P
IMP
SceS000005321
ISS
SpoSPCC285.03
GO:0008150 biological_process P
ND
MmuMGI:1916913

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2948

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2397 ENSANGP00000021642
Anopheles gambiae (Aga) aga2398 ENSANGP00000029014
Ashbya gossypii (Ago) ago4087 AGL225C
Arabidopsis thaliana (Ath) ath19409 At4g15850.1
Caenorhabditis elegans (Cel) cel22162 ZK686.2
(CE34464;
WBGene00022792)
Candida glabrata (Cgl) cgl1970 CAGL0G07975g
Cryptococcus neoformans (Cne) cne5431 179.m00284
Dictyostelium discoideum (Ddi) ddi10504 DDB0219893
Debaryomyces hansenii (Dha) dha3750 DEHA0E11506g
Drosophila melanogaster (Dme) dme9867 CG9680-PA
(FBgn0004556)
Danio rerio (Dre) dre24277 ENSDARP00000029445
(LOC555890)
Takifugu rubripes (Fru) fru1763 SINFRUP00000156941
Gallus gallus (Gga) gga7433 ENSGALP00000010231
(DDX51)
Homo sapiens (Hsa) hsa8473 ENSP00000333746
(DDX51)
Kluyveromyces lactis (Kla) kla4395 KLLA0F06941g
Mus musculus (Mmu) mmu20651 ENSMUSP00000031478
(MGI:1916913)		 Q6P9R1
Neurospora crassa (Ncr) ncr9500 NCU09756.2
Oryza sativa (Osa) osa5761 2428.m00148
Oryza sativa (Osa) osa7429 2502.m00109
Saccharomyces cerevisiae (Sce) sce5507 YNR038W
(S000005321)
Schizosaccharomyces pombe (Spo) spo2245 SPCC285.03 Q76PD3
Yarrowia lipolytica (Yli) yli1682 YALI0B22572g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1916913
GO:0005634 nucleus C
IDA
SpoSPCC285.03
GO:0005730 nucleolus C
IDA
SceS000005321
ISS
SpoSPCC285.03
GO:0005829 cytosol C
IDA
SpoSPCC285.03
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000005321
GO:0003674 molecular_function F
ND
MmuMGI:1916913
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC285.03
NAS
DmeFBgn0004556
TAS
SceS000005321
GO:0008026 ATP-dependent helicase activity F
ISS
AthAt4g15850
GO:0017151 DEAD/H-box RNA helicase binding F
TAS
AthAt4g15850
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000005321
GO:0002119 nematode larval development P
IMP
CelWBGene00022792
GO:0006364 rRNA processing P
IMP
SceS000005321
ISS
SpoSPCC285.03
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00022792
GO:0008150 biological_process P
ND
MmuMGI:1916913
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00022792
GO:0040007 growth P
IMP
CelWBGene00022792
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022792

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC285.03
(Q76PD3)		 YNR038W
(S000005321)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC285.03
GO:0005730 nucleolus C
IDA
SceS000005321
ISS
SpoSPCC285.03
GO:0005829 cytosol C
IDA
SpoSPCC285.03
GO:0030687 preribosome, large subunit precursor C
IDA
SceS000005321
GO:0004004 ATP-dependent RNA helicase activity F
ISS
SpoSPCC285.03
TAS
SceS000005321
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000005321
GO:0006364 rRNA processing P
IMP
SceS000005321
ISS
SpoSPCC285.03

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