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Search term: YNR052C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name POP2
SGD link S000005335
Alternative ID YNR052C
Description RNase of the DEDD superfamily, subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation
Synonyms YNR052C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0304 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA deadenylase subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g06450 GI:15221481
Arabidopsis thaliana (Ath) At1g15920 GI:15218371
Arabidopsis thaliana (Ath) At1g27820 GI:15217727
Arabidopsis thaliana (Ath) At1g27890 GI:15217752
Arabidopsis thaliana (Ath) At1g61470 GI:15219931
Arabidopsis thaliana (Ath) At1g80780 GI:15220828
Arabidopsis thaliana (Ath) At2g32070 GI:15225182
Arabidopsis thaliana (Ath) At3g44240 GI:15229910
Arabidopsis thaliana (Ath) At3g44260 GI:15229916
Arabidopsis thaliana (Ath) At5g10960 GI:15238907
Arabidopsis thaliana (Ath) At5g22250 GI:15242180
Caenorhabditis elegans (Cel) CE22588
(WBGene00000369)		 GI:17556296 Q17345
Drosophila melanogaster (Dme) 7294634 GI:7294634
Homo sapiens (Hsa) HsM4758946 GI:4758946
Homo sapiens (Hsa) Hs17433778_2 GI:17433778
Homo sapiens (Hsa) Hs21361073 GI:20545902
Homo sapiens (Hsa) Hs17978500 GI:17978500
Homo sapiens (Hsa) Hs7019339 GI:7019339
Saccharomyces cerevisiae (Sce) YNR052c
(S000005335)		 GI:6324380 P39008
Schizosaccharomyces pombe (Spo) SPCC18.06c GI:19075885 O74856
Encephalitozoon cuniculi (Ecu) ECU08g0850 GI:19173412 Q8SUQ6
Arabidopsis thaliana (Ath) At1g06450 GI:15221481
Arabidopsis thaliana (Ath) At1g15920 GI:15218371
Arabidopsis thaliana (Ath) At1g27820 GI:15217727
Arabidopsis thaliana (Ath) At1g27890 GI:15217752
Arabidopsis thaliana (Ath) At1g61470 GI:15219931
Arabidopsis thaliana (Ath) At1g80780 GI:15220828
Arabidopsis thaliana (Ath) At2g32070 GI:15225182
Arabidopsis thaliana (Ath) At3g44240 GI:15229910
Arabidopsis thaliana (Ath) At3g44260 GI:15229916
Arabidopsis thaliana (Ath) At5g10960 GI:15238907
Arabidopsis thaliana (Ath) At5g22250 GI:15242180
Caenorhabditis elegans (Cel) CE22588
(WBGene00000369)		 GI:17556296 Q17345
Drosophila melanogaster (Dme) 7294634 GI:7294634
Homo sapiens (Hsa) HsM4758946 GI:4758946
Homo sapiens (Hsa) Hs17433778_2 GI:17433778
Homo sapiens (Hsa) Hs21361073 GI:20545902
Homo sapiens (Hsa) Hs17978500 GI:17978500
Homo sapiens (Hsa) Hs7019339 GI:7019339
Saccharomyces cerevisiae (Sce) YNR052c
(S000005335)		 GI:6324380 P39008
Schizosaccharomyces pombe (Spo) SPCC18.06c GI:19075885 O74856
Encephalitozoon cuniculi (Ecu) ECU08g0850 GI:19173412 Q8SUQ6
Arabidopsis thaliana (Ath) At1g06450 GI:15221481
Arabidopsis thaliana (Ath) At1g15920 GI:15218371
Arabidopsis thaliana (Ath) At1g27820 GI:15217727
Arabidopsis thaliana (Ath) At1g27890 GI:15217752
Arabidopsis thaliana (Ath) At1g61470 GI:15219931
Arabidopsis thaliana (Ath) At1g80780 GI:15220828
Arabidopsis thaliana (Ath) At2g32070 GI:15225182
Arabidopsis thaliana (Ath) At3g44240 GI:15229910
Arabidopsis thaliana (Ath) At3g44260 GI:15229916
Arabidopsis thaliana (Ath) At5g10960 GI:15238907
Arabidopsis thaliana (Ath) At5g22250 GI:15242180
Caenorhabditis elegans (Cel) CE22588
(WBGene00000369)		 GI:17556296 Q17345
Drosophila melanogaster (Dme) 7294634 GI:7294634
Homo sapiens (Hsa) HsM4758946 GI:4758946
Homo sapiens (Hsa) Hs17433778_2 GI:17433778
Homo sapiens (Hsa) Hs21361073 GI:20545902
Homo sapiens (Hsa) Hs17978500 GI:17978500
Homo sapiens (Hsa) Hs7019339 GI:7019339
Saccharomyces cerevisiae (Sce) YNR052c
(S000005335)		 GI:6324380 P39008
Schizosaccharomyces pombe (Spo) SPCC18.06c GI:19075885 O74856
Encephalitozoon cuniculi (Ecu) ECU08g0850 GI:19173412 Q8SUQ6


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00000369
SceS000005335
GO:0005634 nucleus C
IDA
SpoSPCC18.06c
GO:0005737 cytoplasm C
IDA
SceS000005335
ISS
SpoSPCC18.06c
GO:0005829 cytosol C
IDA
SpoSPCC18.06c
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005335
ISS
SpoSPCC18.06c
GO:0043186 P granule C
IDA
CelWBGene00000369
GO:0043332 mating projection tip C
IDA
SceS000005335
GO:0000175 3'-5'-exoribonuclease activity F
IDA
SceS000005335
SpoSPCC18.06c
GO:0003729 mRNA binding F
ISS
SpoSPCC18.06c
GO:0004540 ribonuclease activity F
ISS
AthAt2g32070
At1g15920
At1g27820
At1g27890
At3g44240
At5g10960
At1g06450
At1g80780
At1g61470
At5g22250
At3g44260
GO:0046872 metal ion binding F
IDA
SpoSPCC18.06c
GO:0000003 reproduction P
IMP
CelWBGene00000369
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IDA
SceS000005335
SpoSPCC18.06c
IMP
SceS000005335
GO:0002119 nematode larval development P
IMP
CelWBGene00000369
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005335
ISS
SpoSPCC18.06c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IMP
SceS000005335
ISS
SpoSPCC18.06c
GO:0009451 RNA modification P
ISS
AthAt1g27820
At1g61470
At2g32070
At1g80780
At3g44240
At1g06450
At3g44260
At1g27890
At5g10960
At5g22250
At1g15920
GO:0009607 response to biotic stimulus P
IEP
AthAt3g44260
GO:0009611 response to wounding P
IEP
AthAt3g44260
GO:0009790 embryo development P
IMP
CelWBGene00000369
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00000369
GO:0010171 body morphogenesis P
IMP
CelWBGene00000369
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00000369
GO:0051729 germline cell cycle switching, mitotic to meiotic
cell cycle		 P
IMP
CelWBGene00000369

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
74806

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) POP2
(S000005335)		 GI:6324380 P39008
Kluyveromyces lactis (Kla) KLLA0C18821g GI:50306155
Eremothecium gossypii (Ego) AGOS_ABR119C GI:45185349


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000005335
GO:0005737 cytoplasm C
IDA
SceS000005335
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005335
GO:0043332 mating projection tip C
IDA
SceS000005335
GO:0000175 3'-5'-exoribonuclease activity F
IDA
SceS000005335
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IDA
SceS000005335
IMP
SceS000005335
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005335
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IMP
SceS000005335

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_929

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8495 ENSANGP00000019983
Ashbya gossypii (Ago) ago711 ABR119C
Arabidopsis thaliana (Ath) ath7467 At1g80780.1
Arabidopsis thaliana (Ath) ath7468 At1g80780.2
Arabidopsis thaliana (Ath) ath10214 At2g32070.1
Arabidopsis thaliana (Ath) ath23302 At5g10960.1
Caenorhabditis elegans (Cel) cel19944 Y56A3A.20
(CE22588;
WBGene00000369)
Candida glabrata (Cgl) cgl564 CAGL0C03399g
Dictyostelium discoideum (Ddi) ddi8365 DDB0185899
Dictyostelium discoideum (Ddi) ddi9934 DDB0186421
Debaryomyces hansenii (Dha) dha3333 DEHA0E02068g
Drosophila melanogaster (Dme) dme9178 CG5684-PA
(FBgn0036239)
Drosophila melanogaster (Dme) dme9179 CG5684-PB
(FBgn0036239)
Drosophila melanogaster (Dme) dme9180 CG5684-PC
(FBgn0036239)
Danio rerio (Dre) dre11329 ENSDARP00000016880
(LOC554420)
Danio rerio (Dre) dre5432 ENSDARP00000017343
Danio rerio (Dre) dre5376 ENSDARP00000041788
(zgc:153168)		 Q08BM8
Danio rerio (Dre) dre5377 ENSDARP00000049016
Encephalitozoon cuniculi (Ecu) ecu243 19173412
Takifugu rubripes (Fru) fru4773 SINFRUP00000131745
Takifugu rubripes (Fru) fru18235 SINFRUP00000137835
Gallus gallus (Gga) gga18034 ENSGALP00000022159
(CNOT7)		 Q5ZJV9
Homo sapiens (Hsa) hsa26050 ENSP00000285896
(CNOT8)		 Q9UFF9
Homo sapiens (Hsa) hsa29958 ENSP00000354452
Homo sapiens (Hsa) hsa29959 ENSP00000355279
(CNOT7)		 Q9UIV1
Kluyveromyces lactis (Kla) kla2038 KLLA0C18821g
Mus musculus (Mmu) mmu3712 ENSMUSP00000020822
(MGI:1916375)		 Q9D8X5
Mus musculus (Mmu) mmu25886 ENSMUSP00000034012
(MGI:1298230)		 Q60809
Neurospora crassa (Ncr) ncr8772 NCU09001.2
Oryza sativa (Osa) osa5765 2428.m00152
Oryza sativa (Osa) osa7435 2502.m00113
Oryza sativa (Osa) osa47905 5796.m00208
Oryza sativa (Osa) osa55798 6173.m00221
Plasmodium falciparum (Pfa) pfa1924 MAL8P1.104
Rattus norvegicus (Rno) rno5033 ENSRNOP00000003555
(RGD:1306401)		 Q5U2U9
Rattus norvegicus (Rno) rno12514 ENSRNOP00000016882
(RGD:1305313)		 B3DMA5
Saccharomyces cerevisiae (Sce) sce5521 YNR052C
(S000005335)
Schizosaccharomyces pombe (Spo) spo1198 SPCC18.06c O74856
Yarrowia lipolytica (Yli) yli1256 YALI0B12496g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
CelWBGene00000369
SceS000005335
GO:0005575 cellular_component C
ND
MmuMGI:1916375
GO:0005634 nucleus C
IDA
SpoSPCC18.06c
ISO
MmuMGI:1298230
ISS
DmeFBgn0036239
GO:0005737 cytoplasm C
IDA
DmeFBgn0036239
SceS000005335
ISS
SpoSPCC18.06c
GO:0005829 cytosol C
IDA
SpoSPCC18.06c
GO:0030014 CCR4-NOT complex C
IPI
MmuMGI:1298230
GO:0030015 CCR4-NOT core complex C
IPI
SceS000005335
ISS
SpoSPCC18.06c
GO:0043186 P granule C
IDA
CelWBGene00000369
GO:0043332 mating projection tip C
IDA
SceS000005335
GO:0000175 3'-5'-exoribonuclease activity F
IDA
SceS000005335
SpoSPCC18.06c
GO:0003674 molecular_function F
ND
MmuMGI:1916375
GO:0003729 mRNA binding F
ISS
SpoSPCC18.06c
GO:0004540 ribonuclease activity F
ISS
AthAt2g32070
At5g10960
At1g80780
GO:0005515 protein binding F
IPI
MmuMGI:1298230
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0036239
GO:0016563 transcription activator activity F
IDA
MmuMGI:1298230
GO:0046872 metal ion binding F
IDA
SpoSPCC18.06c
GO:0000003 reproduction P
IMP
CelWBGene00000369
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IDA
SceS000005335
SpoSPCC18.06c
IMP
DmeFBgn0036239
SceS000005335
GO:0002119 nematode larval development P
IMP
CelWBGene00000369
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
IPI
SceS000005335
ISS
DmeFBgn0036239
SpoSPCC18.06c
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IMP
SceS000005335
ISS
SpoSPCC18.06c
GO:0007517 muscle organ development P
IMP
DmeFBgn0036239
GO:0008150 biological_process P
ND
MmuMGI:1916375
GO:0009451 RNA modification P
ISS
AthAt2g32070
At1g80780
At5g10960
GO:0009790 embryo development P
IMP
CelWBGene00000369
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00000369
GO:0010171 body morphogenesis P
IMP
CelWBGene00000369
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00000369
GO:0045944 positive regulation of transcription from RNA
polymerase II promoter		 P
IDA
MmuMGI:1298230
GO:0048666 neuron development P
IMP
DmeFBgn0036239
GO:0051729 germline cell cycle switching, mitotic to meiotic
cell cycle		 P
IMP
CelWBGene00000369

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC18.06c
(O74856)		 YNR052C
(S000005335)