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Search term: YOL010W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RCL1
SGD link S000005370
Alternative ID YOL010W
Description Subunit of U3-containing 90S preribosome processome complex involved in 18S rRNA biogenesis and small ribosomal subunit assembly; stimulates Bms1p GTPase and U3 binding activity; similar to RNA cyclase-like proteins but no activity detected
Synonyms YOL010W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3980 -CDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA 3'-terminal phosphate cyclase

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE05125 GI:17538043
Drosophila melanogaster (Dme) 7290258
(FBgn0025630)		 GI:18543269
Drosophila melanogaster (Dme) 7292922 GI:12644328
Homo sapiens (Hsa) Hs4506589 GI:4506589 O00442
Homo sapiens (Hsa) Hs21361285 GI:10434565 Q9Y2P8
Homo sapiens (Hsa) HsM5032043 GI:5032043
Saccharomyces cerevisiae (Sce) YOL010w
(S000005370)		 GI:6324564 Q08096
Schizosaccharomyces pombe (Spo) SPAC12G12.06c GI:19113804 Q09870
Encephalitozoon cuniculi (Ecu) ECU06g1030 GI:19074353 Q8SRP7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
ISS
DmeFBgn0025630
GO:0005730 nucleolus C
IDA
SceS000005370
ISS
SpoSPAC12G12.06c
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC12G12.06c
GO:0030686 90S preribosome C
IDA
SceS000005370
GO:0003674 molecular_function F
ND
SpoSPAC12G12.06c
GO:0003963 RNA-3'-phosphate cyclase activity F
ISS
DmeFBgn0025630
GO:0008047 enzyme activator activity F
IDA
SceS000005370
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0006364 rRNA processing P
ISS
SpoSPAC12G12.06c
GO:0009451 RNA modification P
RCA
SceS000005370

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
4217

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RCL1 GI:157426877
Pan troglodytes (Ptr) RCL1 GI:114623668
Canis familiaris (Cfa) RCL1 GI:73946912
Mus musculus (Mmu) Rcl1
(MGI:1913275)		 GI:10946950 Q3THS8
Rattus norvegicus (Rno) Rcl1
(RGD:1305320)		 GI:61557112
Gallus gallus (Gga) RCL1 GI:50761706
Drosophila melanogaster (Dme) Rtc1
(FBgn0020909)		 GI:18860065
Anopheles gambiae (Aga) AgaP_AGAP010498 GI:58386084
Caenorhabditis elegans (Cel) ZK1127.5
(CE32083;
WBGene00022852)		 GI:32564710
Schizosaccharomyces pombe (Spo) SPAC12G12.06c GI:19113804 Q09870
Saccharomyces cerevisiae (Sce) RCL1
(S000005370)		 GI:6324564 Q08096
Kluyveromyces lactis (Kla) KLLA0C05984g GI:50305013
Eremothecium gossypii (Ego) AGOS_ACL015W GI:45185673
Arabidopsis thaliana (Ath) AT5G22100 GI:22326964
Oryza sativa (Osa) Os03g0833700 GI:115456421
Plasmodium falciparum (Pfa) PF14_0677 GI:124810346


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAT5G22100
PfaPF14_0677
GO:0005634 nucleus C
NAS
DmeFBgn0020909
GO:0005730 nucleolus C
IDA
MmuMGI:1913275
SceS000005370
ISS
SpoSPAC12G12.06c
NAS
HsaRCL1
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC12G12.06c
GO:0030686 90S preribosome C
IDA
SceS000005370
GO:0003674 molecular_function F
ND
SpoSPAC12G12.06c
GO:0003963 RNA-3'-phosphate cyclase activity F
ISS
AthAT5G22100
DmeFBgn0020909
NAS
HsaRCL1
GO:0008047 enzyme activator activity F
IDA
SceS000005370
GO:0000003 reproduction P
IMP
CelWBGene00022852
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000910 cytokinesis P
IMP
CelWBGene00022852
GO:0002119 nematode larval development P
IMP
CelWBGene00022852
GO:0006364 rRNA processing P
ISA
MmuMGI:1913275
ISS
SpoSPAC12G12.06c
GO:0008150 biological_process P
ND
AthAT5G22100
HsaRCL1
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00022852
GO:0009451 RNA modification P
RCA
SceS000005370
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022852
GO:0010171 body morphogenesis P
IMP
CelWBGene00022852
GO:0016246 RNA interference P
IMP
CelWBGene00022852
GO:0018991 oviposition P
IMP
CelWBGene00022852
GO:0040007 growth P
IMP
CelWBGene00022852
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022852
GO:0040011 locomotion P
IMP
CelWBGene00022852
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00022852
GO:0042254 ribosome biogenesis P
ISS
PfaPF14_0677
GO:0051301 cell division P
IMP
CelWBGene00022852

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2239

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7463 ENSANGP00000020525
Ashbya gossypii (Ago) ago1034 ACL015W
Arabidopsis thaliana (Ath) ath24438 At5g22100.1
Caenorhabditis elegans (Cel) cel21570 ZK1127.5
(CE32083;
WBGene00022852)
Candida glabrata (Cgl) cgl1044 CAGL0E02343g
Cryptococcus neoformans (Cne) cne4413 177.m03166
Dictyostelium discoideum (Ddi) ddi4738 DDB0218402
Debaryomyces hansenii (Dha) dha5496 DEHA0F24860g
Drosophila melanogaster (Dme) dme17749 CG11130-PA
(FBgn0020909)
Encephalitozoon cuniculi (Ecu) ecu1580 19074353
Takifugu rubripes (Fru) fru9076 SINFRUP00000138294
Takifugu rubripes (Fru) fru9075 SINFRUP00000168521
Gallus gallus (Gga) gga27722 ENSGALP00000024184
(RCL1)
Homo sapiens (Hsa) hsa30984 ENSP00000239262
Kluyveromyces lactis (Kla) kla1463 KLLA0C05984g
Mus musculus (Mmu) mmu13570 ENSMUSP00000067579
(MGI:1913275)		 Q9JJT0
Neurospora crassa (Ncr) ncr2591 NCU02675.2
Oryza sativa (Osa) osa41809 5267.m00181
Oryza sativa (Osa) osa84827 8365.m00170
Plasmodium falciparum (Pfa) pfa1504 PF14_0677
Rattus norvegicus (Rno) rno3949 ENSRNOP00000020809
(RGD:1305320)		 Q5BJN0
Saccharomyces cerevisiae (Sce) sce5557 YOL010W
(S000005370)
Schizosaccharomyces pombe (Spo) spo1539 SPAC12G12.06c Q09870
Yarrowia lipolytica (Yli) yli191 YALI0A05555g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAT5G22100
PfaPF14_0677
GO:0005634 nucleus C
NAS
DmeFBgn0020909
GO:0005730 nucleolus C
IDA
MmuMGI:1913275
SceS000005370
ISS
SpoSPAC12G12.06c
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC12G12.06c
GO:0030686 90S preribosome C
IDA
SceS000005370
GO:0003674 molecular_function F
ND
SpoSPAC12G12.06c
GO:0003963 RNA-3'-phosphate cyclase activity F
ISS
AthAT5G22100
DmeFBgn0020909
GO:0008047 enzyme activator activity F
IDA
SceS000005370
GO:0000003 reproduction P
IMP
CelWBGene00022852
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000910 cytokinesis P
IMP
CelWBGene00022852
GO:0002119 nematode larval development P
IMP
CelWBGene00022852
GO:0006364 rRNA processing P
ISA
MmuMGI:1913275
ISS
SpoSPAC12G12.06c
GO:0008150 biological_process P
ND
AthAT5G22100
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00022852
GO:0009451 RNA modification P
RCA
SceS000005370
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00022852
GO:0010171 body morphogenesis P
IMP
CelWBGene00022852
GO:0016246 RNA interference P
IMP
CelWBGene00022852
GO:0018991 oviposition P
IMP
CelWBGene00022852
GO:0040007 growth P
IMP
CelWBGene00022852
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00022852
GO:0040011 locomotion P
IMP
CelWBGene00022852
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00022852
GO:0042254 ribosome biogenesis P
ISS
PfaPF14_0677
GO:0051301 cell division P
IMP
CelWBGene00022852

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC12G12.06c
(Q09870)		 YOL010W
(S000005370)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005730 nucleolus C
IDA
SceS000005370
ISS
SpoSPAC12G12.06c
GO:0005783 endoplasmic reticulum C
IDA
SpoSPAC12G12.06c
GO:0030686 90S preribosome C
IDA
SceS000005370
GO:0003674 molecular_function F
ND
SpoSPAC12G12.06c
GO:0008047 enzyme activator activity F
IDA
SceS000005370
GO:0000447 endonucleolytic cleavage in ITS1 to separate
SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000472 endonucleolytic cleavage to generate mature 5'-end
of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)		 P
IMP
SceS000005370
GO:0006364 rRNA processing P
ISS
SpoSPAC12G12.06c
GO:0009451 RNA modification P
RCA
SceS000005370

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk