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Search term: YOL094C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RFC4
SGD link S000005454
Alternative ID YOL094C
Description Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon
Synonyms YOL094C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0991 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Replication factor C, subunit RFC2

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g63160 GI:15221697
Caenorhabditis elegans (Cel) CE17139
(WBGene00004338)
GI:17541988 O44175
Drosophila melanogaster (Dme) 7292439
(FBgn0015287)
GI:17647857
Homo sapiens (Hsa) Hs22045214 GI:22045214
Homo sapiens (Hsa) Hs4506487 GI:4506487
Saccharomyces cerevisiae (Sce) YOL094c
(S000005454)
GI:6324478 P40339
Schizosaccharomyces pombe (Spo) SPAC1687.03c GI:19114033 O94449
Encephalitozoon cuniculi (Ecu) ECU09g1330 GI:19173253
Arabidopsis thaliana (Ath) At1g63160 GI:15221697
Caenorhabditis elegans (Cel) CE17139
(WBGene00004338)
GI:17541988 O44175
Drosophila melanogaster (Dme) 7292439
(FBgn0015287)
GI:17647857
Homo sapiens (Hsa) Hs22045214 GI:22045214
Homo sapiens (Hsa) Hs4506487 GI:4506487
Saccharomyces cerevisiae (Sce) YOL094c
(S000005454)
GI:6324478 P40339
Schizosaccharomyces pombe (Spo) SPAC1687.03c GI:19114033 O94449
Encephalitozoon cuniculi (Ecu) ECU09g1330 GI:19173253


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC1687.03c
GO:0005634 nucleus C
IDA
SpoSPAC1687.03c
GO:0005663 DNA replication factor C complex C
IDA
SceS000005454
ISS
AthAt1g63160
SceS000005454
SpoSPAC1687.03c
GO:0005829 cytosol C
IDA
SpoSPAC1687.03c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPAC1687.03c
IPI
SceS000005454
GO:0043596 nuclear replication fork C
IC
SpoSPAC1687.03c
GO:0003689 DNA clamp loader activity F
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0016887 ATPase activity F
ISS
AthAt1g63160
GO:0017076 purine nucleotide binding F
ISS
SceS000005454
GO:0000003 reproduction P
IMP
CelWBGene00004338
GO:0006272 leading strand elongation P
IDA
SceS000005454
ISS
SpoSPAC1687.03c
GO:0006298 mismatch repair P
TAS
SceS000005454
GO:0007062 sister chromatid cohesion P
IPI
SceS000005454
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004338
GO:0040011 locomotion P
IMP
CelWBGene00004338

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6885

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RFC2 GI:31563534
Pan troglodytes (Ptr) RFC2 GI:114613993
Canis familiaris (Cfa) RFC2 GI:73957665
Mus musculus (Mmu) Rfc2
(MGI:1341868)
GI:11177922 Q4KL82
Rattus norvegicus (Rno) Rfc2
(RGD:621198)
GI:55926133
Gallus gallus (Gga) RFC2 GI:45382983
Drosophila melanogaster (Dme) RfC40
(FBgn0015287)
GI:17647857
Anopheles gambiae (Aga) AgaP_AGAP007477 GI:158285610
Caenorhabditis elegans (Cel) rfc-2
(CE17139;
WBGene00004338)
GI:17541988 O44175
Schizosaccharomyces pombe (Spo) rfc4
(SPAC1687.03c)
GI:19114033 O94449
Saccharomyces cerevisiae (Sce) RFC4
(S000005454)
GI:6324478 P40339
Kluyveromyces lactis (Kla) KLLA0C03718g GI:50304813
Eremothecium gossypii (Ego) AGOS_ADR111W GI:45187984
Magnaporthe grisea (Mgr) MGG_07526 GI:39972449
Arabidopsis thaliana (Ath) AT1G63160 GI:15221697
Oryza sativa (Osa) Os04g0569000 GI:115459988
Plasmodium falciparum (Pfa) PFL2005w GI:124806707


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC1687.03c
GO:0005634 nucleus C
IDA
SpoSPAC1687.03c
GO:0005654 nucleoplasm C
EXP
HsaRFC2
GO:0005663 DNA replication factor C complex C
IDA
HsaRFC2
SceS000005454
ISS
AthAt1g63160
PfaPFL2005w
SceS000005454
SpoSPAC1687.03c
GO:0005829 cytosol C
IDA
SpoSPAC1687.03c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPAC1687.03c
IPI
SceS000005454
GO:0043596 nuclear replication fork C
IC
SpoSPAC1687.03c
GO:0003689 DNA clamp loader activity F
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0005515 protein binding F
IPI
HsaRFC2
GO:0016887 ATPase activity F
ISS
AthAt1g63160
GO:0017076 purine nucleotide binding F
ISS
SceS000005454
GO:0000003 reproduction P
IMP
CelWBGene00004338
GO:0006260 DNA replication P
EXP
HsaRFC2
ISS
PfaPFL2005w
GO:0006272 leading strand elongation P
IDA
SceS000005454
ISS
SpoSPAC1687.03c
GO:0006297 nucleotide-excision repair, DNA gap
filling
P
EXP
HsaRFC2
GO:0006298 mismatch repair P
TAS
SceS000005454
GO:0007062 sister chromatid cohesion P
IPI
SceS000005454
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004338
GO:0040011 locomotion P
IMP
CelWBGene00004338

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2147

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga2872 ENSANGP00000009446
Ashbya gossypii (Ago) ago1852 ADR111W
Arabidopsis thaliana (Ath) ath5515 At1g63160.1
Caenorhabditis elegans (Cel) cel10929 F58F6.4
(CE17139;
WBGene00004338)
Candida glabrata (Cgl) cgl2852 CAGL0I07645g
Cryptococcus neoformans (Cne) cne4333 177.m03088
Dictyostelium discoideum (Ddi) ddi10982 DDB0184100
Debaryomyces hansenii (Dha) dha626 DEHA0A13992g
Drosophila melanogaster (Dme) dme7905 CG14999-PA
(FBgn0015287)
Danio rerio (Dre) dre13595 ENSDARP00000016472
(zgc:110810)
Q5CZN5
Encephalitozoon cuniculi (Ecu) ecu1404 19173253
Takifugu rubripes (Fru) fru9789 SINFRUP00000128611
Gallus gallus (Gga) gga8698 ENSGALP00000001978
(RFC2)
P53033
Homo sapiens (Hsa) hsa28779 ENSP00000055077
(RFC2)
P35250-1
Kluyveromyces lactis (Kla) kla1361 KLLA0C03718g
Mus musculus (Mmu) mmu31138 ENSMUSP00000023867
(MGI:1341868)
Q9WUK4
Neurospora crassa (Ncr) ncr10101 NCU10467.2
Oryza sativa (Osa) osa43378 5453.m00113
Plasmodium falciparum (Pfa) pfa5182 PFL2005w
Rattus norvegicus (Rno) rno8419 ENSRNOP00000001989
(RGD:621198)
Q641W4
Saccharomyces cerevisiae (Sce) sce5649 YOL094C
(S000005454)
Schizosaccharomyces pombe (Spo) spo3335 SPAC1687.03c O94449
Yarrowia lipolytica (Yli) yli5652 YALI0F07337g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC1687.03c
GO:0005634 nucleus C
IDA
SpoSPAC1687.03c
GO:0005663 DNA replication factor C complex C
IDA
SceS000005454
ISS
AthAt1g63160
PfaPFL2005w
SceS000005454
SpoSPAC1687.03c
GO:0005829 cytosol C
IDA
SpoSPAC1687.03c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPAC1687.03c
IPI
SceS000005454
GO:0043596 nuclear replication fork C
IC
SpoSPAC1687.03c
GO:0003689 DNA clamp loader activity F
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0016887 ATPase activity F
ISS
AthAt1g63160
GO:0017076 purine nucleotide binding F
ISS
SceS000005454
GO:0000003 reproduction P
IMP
CelWBGene00004338
GO:0006260 DNA replication P
ISS
PfaPFL2005w
GO:0006272 leading strand elongation P
IDA
SceS000005454
ISS
SpoSPAC1687.03c
GO:0006298 mismatch repair P
TAS
SceS000005454
GO:0007062 sister chromatid cohesion P
IPI
SceS000005454
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00004338
GO:0040011 locomotion P
IMP
CelWBGene00004338

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC1687.03c
(O94449)
YOL094C
(S000005454)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPAC1687.03c
GO:0005634 nucleus C
IDA
SpoSPAC1687.03c
GO:0005663 DNA replication factor C complex C
IDA
SceS000005454
ISS
SceS000005454
SpoSPAC1687.03c
GO:0005829 cytosol C
IDA
SpoSPAC1687.03c
GO:0031389 Rad17 RFC-like complex C
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031390 Ctf18 RFC-like complex C
IPI
SceS000005454
TAS
SpoSPAC1687.03c
GO:0031391 Elg1 RFC-like complex C
IDA
SpoSPAC1687.03c
IPI
SceS000005454
GO:0043596 nuclear replication fork C
IC
SpoSPAC1687.03c
GO:0003689 DNA clamp loader activity F
IDA
SceS000005454
TAS
SpoSPAC1687.03c
GO:0017076 purine nucleotide binding F
ISS
SceS000005454
GO:0006272 leading strand elongation P
IDA
SceS000005454
ISS
SpoSPAC1687.03c
GO:0006298 mismatch repair P
TAS
SceS000005454
GO:0007062 sister chromatid cohesion P
IPI
SceS000005454

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk