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Search term: YOL125W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TRM13
SGD link S000005485
Alternative ID YOL125W
Description 2'-O-methyltransferase responsible for modification of tRNA at position 4; C-terminal domain has similarity to Rossmann-fold (RFM) superfamily of RNA methyltransferases
Synonyms YOL125W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2811 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g01880 GI:15234358
Caenorhabditis elegans (Cel) CE22211
(WBGene00013026)		 GI:17565856 Q9XW93
Drosophila melanogaster (Dme) 7298929 GI:7298929
Homo sapiens (Hsa) Hs11024704
(CCDC76)		 GI:11024704
Saccharomyces cerevisiae (Sce) YOL125w
(S000005485)		 GI:6324447 Q12383
Schizosaccharomyces pombe (Spo) SPAC1805.03c GI:19114826 Q9UTH1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005485
SpoSPAC1805.03c
GO:0005730 nucleolus C
IDA
SpoSPAC1805.03c
GO:0005737 cytoplasm C
IDA
SceS000005485
GO:0005829 cytosol C
IDA
SpoSPAC1805.03c
GO:0008175 tRNA methyltransferase activity F
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c
GO:0006399 tRNA metabolic process P
RCA
SceS000005485
GO:0009451 RNA modification P
RCA
SceS000005485
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000005485
GO:0030488 tRNA methylation P
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6875

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) CCDC76 GI:11024704
Pan troglodytes (Ptr) CCDC76 GI:114557883
Canis familiaris (Cfa) CCDC76 GI:73959992
Mus musculus (Mmu) Ccdc76
(MGI:1925219)		 GI:124430711 Q3V3E3
Rattus norvegicus (Rno) Ccdc76 GI:109465425
Gallus gallus (Gga) CCDC76 GI:118094303
Drosophila melanogaster (Dme) CG18048
(FBgn0037435)		 GI:28571533
Anopheles gambiae (Aga) AgaP_AGAP000681 GI:158289495
Caenorhabditis elegans (Cel) Y49A3A.3
(CE22211;
WBGene00013026)		 GI:17565856 Q9XW93
Schizosaccharomyces pombe (Spo) trm13
(SPAC1805.03c)		 GI:19114826 Q9UTH1
Saccharomyces cerevisiae (Sce) TRM13
(S000005485)		 GI:6324447 Q12383
Kluyveromyces lactis (Kla) KLLA0E07524g GI:50308573
Eremothecium gossypii (Ego) AGOS_ADL163W GI:45187710
Arabidopsis thaliana (Ath) AT4G01880 GI:30678989
Oryza sativa (Osa) Os03g0833200 GI:115456413


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1925219
GO:0005634 nucleus C
IDA
SceS000005485
SpoSPAC1805.03c
GO:0005730 nucleolus C
IDA
SpoSPAC1805.03c
GO:0005737 cytoplasm C
IDA
SceS000005485
GO:0005829 cytosol C
IDA
SpoSPAC1805.03c
GO:0003674 molecular_function F
ND
MmuMGI:1925219
GO:0008175 tRNA methyltransferase activity F
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c
GO:0006399 tRNA metabolic process P
RCA
SceS000005485
GO:0008150 biological_process P
ND
MmuMGI:1925219
GO:0009451 RNA modification P
RCA
SceS000005485
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000005485
GO:0030488 tRNA methylation P
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_4011

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga15335 ENSANGP00000019057
Ashbya gossypii (Ago) ago1578 ADL163W
Arabidopsis thaliana (Ath) ath18055 At4g01880.1
Caenorhabditis elegans (Cel) cel19330 Y49A3A.3
(CE22211;
WBGene00013026)
Candida glabrata (Cgl) cgl1025 CAGL0E01903g
Dictyostelium discoideum (Ddi) ddi10170 DDB0192091
Debaryomyces hansenii (Dha) dha4047 DEHA0E18194g
Drosophila melanogaster (Dme) dme11208 CG18048-PA
(FBgn0037435)
Danio rerio (Dre) dre14300 ENSDARP00000025162
Takifugu rubripes (Fru) fru5378 SINFRUP00000163840
Gallus gallus (Gga) gga22424 ENSGALP00000008467
(CCDC76)
Homo sapiens (Hsa) hsa1559 ENSP00000241962
Kluyveromyces lactis (Kla) kla3288 KLLA0E07524g
Mus musculus (Mmu) mmu17457 ENSMUSP00000047320
(MGI:1925219)		 Q8BYH3
Oryza sativa (Osa) osa65199 6822.m00235
Rattus norvegicus (Rno) rno16916 ENSRNOP00000020377
(RGD:1565211)		 B2GV29
Saccharomyces cerevisiae (Sce) sce5683 YOL125W
(S000005485)
Schizosaccharomyces pombe (Spo) spo293 SPAC1805.03c Q9UTH1
Yarrowia lipolytica (Yli) yli4978 YALI0E27137g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1925219
GO:0005634 nucleus C
IDA
SceS000005485
SpoSPAC1805.03c
GO:0005730 nucleolus C
IDA
SpoSPAC1805.03c
GO:0005737 cytoplasm C
IDA
SceS000005485
GO:0005829 cytosol C
IDA
SpoSPAC1805.03c
GO:0003674 molecular_function F
ND
MmuMGI:1925219
GO:0008175 tRNA methyltransferase activity F
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c
GO:0006399 tRNA metabolic process P
RCA
SceS000005485
GO:0008150 biological_process P
ND
MmuMGI:1925219
GO:0009451 RNA modification P
RCA
SceS000005485
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000005485
GO:0030488 tRNA methylation P
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1805.03c
(Q9UTH1)		 YOL125W
(S000005485)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005485
SpoSPAC1805.03c
GO:0005730 nucleolus C
IDA
SpoSPAC1805.03c
GO:0005737 cytoplasm C
IDA
SceS000005485
GO:0005829 cytosol C
IDA
SpoSPAC1805.03c
GO:0008175 tRNA methyltransferase activity F
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c
GO:0006399 tRNA metabolic process P
RCA
SceS000005485
GO:0009451 RNA modification P
RCA
SceS000005485
GO:0018193 peptidyl-amino acid modification P
RCA
SceS000005485
GO:0030488 tRNA methylation P
IDA
SceS000005485
IMP
SceS000005485
ISS
SpoSPAC1805.03c

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GO info in one table:

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