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Search term: YOL143C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RIB4
SGD link S000005503
Alternative ID YOL143C
Description Lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, also known as DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin
Synonyms YOL143C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3243 A---YP-

KOGs classification KOGs description
METABOLISM 6,7-dimethyl-8-ribityllumazine synthase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g44050 GI:15224809
Saccharomyces cerevisiae (Sce) YOL143c
(S000005503)		 GI:6324429 P50861
Schizosaccharomyces pombe (Spo) SPBC409.13 GI:19112255 Q9UUB1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005503
SpoSPBC409.13
ISS
SpoSPBC409.13
GO:0005737 cytoplasm C
IDA
SceS000005503
SpoSPBC409.13
ISS
SpoSPBC409.13
GO:0009507 chloroplast C
IDA
AthAt2g44050
GO:0009570 chloroplast stroma C
IDA
AthAt2g44050
GO:0000906 6,7-dimethyl-8-ribityllumazine synthase
activity		 F
IGI
AthAt2g44050
SceS000005503
ISS
AthAt2g44050
SceS000005503
SpoSPBC409.13
GO:0009231 riboflavin biosynthetic process P
IGI
AthAt2g44050
IMP
SceS000005503
ISS
AthAt2g44050
SpoSPBC409.13
GO:0009867 jasmonic acid mediated signaling
pathway		 P
IGI
AthAt2g44050

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
80217

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RIB4
(S000005503)		 GI:6324429 P50861
Kluyveromyces lactis (Kla) KLLA0E01958g GI:50308071
Arabidopsis thaliana (Ath) COS1 GI:15224809
Oryza sativa (Osa) Os04g0497400 GI:115459212


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005503
GO:0005737 cytoplasm C
IDA
SceS000005503
GO:0009507 chloroplast C
IDA
AthCOS1
GO:0009570 chloroplast stroma C
IDA
AthCOS1
GO:0000906 6,7-dimethyl-8-ribityllumazine synthase
activity		 F
IGI
AthCOS1
SceS000005503
ISS
AthCOS1
SceS000005503
GO:0009231 riboflavin biosynthetic process P
IGI
AthCOS1
IMP
SceS000005503
ISS
AthCOS1
GO:0009867 jasmonic acid mediated signaling
pathway		 P
IGI
AthCOS1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3011

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga13348 ENSANGP00000000293
Ashbya gossypii (Ago) ago4707 AGR396W
Arabidopsis thaliana (Ath) ath11609 At2g44050.1
Candida glabrata (Cgl) cgl265 CAGL0B01419g
Cryptococcus neoformans (Cne) cne1191 180.m00120
Debaryomyces hansenii (Dha) dha2517 DEHA0D04884g
Escherichia coli (Eco) eco405 16128400
Kluyveromyces lactis (Kla) kla3035 KLLA0E01958g
Neurospora crassa (Ncr) ncr9130 NCU09371.2
Oryza sativa (Osa) osa81188 8119.m00183
Saccharomyces cerevisiae (Sce) sce5701 YOL143C
(S000005503)
Schizosaccharomyces pombe (Spo) spo4980 SPBC409.13 Q9UUB1
Yarrowia lipolytica (Yli) yli407 YALI0A12045g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005503
SpoSPBC409.13
ISS
SpoSPBC409.13
GO:0005737 cytoplasm C
IDA
SceS000005503
SpoSPBC409.13
ISS
SpoSPBC409.13
GO:0009507 chloroplast C
IDA
AthAt2g44050
GO:0009570 chloroplast stroma C
IDA
AthAt2g44050
GO:0000906 6,7-dimethyl-8-ribityllumazine synthase
activity		 F
IGI
AthAt2g44050
SceS000005503
ISS
AthAt2g44050
SceS000005503
SpoSPBC409.13
GO:0009231 riboflavin biosynthetic process P
IGI
AthAt2g44050
IMP
SceS000005503
ISS
AthAt2g44050
SpoSPBC409.13
GO:0009867 jasmonic acid mediated signaling
pathway		 P
IGI
AthAt2g44050

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC409.13
(Q9UUB1)		 YOL143C
(S000005503)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005503
SpoSPBC409.13
ISS
SpoSPBC409.13
GO:0005737 cytoplasm C
IDA
SceS000005503
SpoSPBC409.13
ISS
SpoSPBC409.13
GO:0000906 6,7-dimethyl-8-ribityllumazine synthase
activity		 F
IGI
SceS000005503
ISS
SceS000005503
SpoSPBC409.13
GO:0009231 riboflavin biosynthetic process P
IMP
SceS000005503
ISS
SpoSPBC409.13

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