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Search term: YOL145C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CTR9
SGD link S000005505
Alternative ID YOL145C
Description Component of the Paf1p complex that binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cyclin genes; contains TPR repeats
Synonyms YOL145C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2002 ACDHYPE

KOGs classification KOGs description
METABOLISM TPR-containing nuclear phosphoprotein that regulates K(+) uptake

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g06210 GI:15225077
Caenorhabditis elegans (Cel) CE20456
(WBGene00007184)		 GI:17551878 Q03560
Drosophila melanogaster (Dme) 7291539 GI:7291539
Drosophila melanogaster (Dme) 7292059 GI:19923040
Homo sapiens (Hsa) Hs7661950
(CTR9)		 GI:7661950 Q6PD62
Saccharomyces cerevisiae (Sce) YOL145c
(S000005505)		 GI:6324427 P89105
Schizosaccharomyces pombe (Spo) SPAC27D7.14c GI:19115532 O42668
Encephalitozoon cuniculi (Ecu) ECU06g1220 GI:19074372 Q8SV89


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005505
SpoSPAC27D7.14c
GO:0005816 spindle pole body C
IDA
SpoSPAC27D7.14c
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000005505
GO:0016020 membrane C
IDA
AthAt2g06210
GO:0016593 Cdc73/Paf1 complex C
IDA
HsaCTR9
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0003674 molecular_function F
ND
SpoSPAC27D7.14c
GO:0005515 protein binding F
IPI
HsaCTR9
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000005505
GO:0045142 triplex DNA binding F
IDA
SceS000005505
GO:0000003 reproduction P
IMP
CelWBGene00007184
GO:0002119 nematode larval development P
IMP
CelWBGene00007184
GO:0006362 RNA elongation from RNA polymerase I
promoter		 P
IMP
SceS000005505
GO:0006366 transcription from RNA polymerase II
promoter		 P
IPI
SceS000005505
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0006813 potassium ion transport P
IMP
SpoSPAC27D7.14c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007184
GO:0007059 chromosome segregation P
IMP
SceS000005505
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007184
GO:0009910 negative regulation of flower development P
IMP
AthAt2g06210
GO:0010390 histone monoubiquitination P
IDA
HsaCTR9
GO:0016571 histone methylation P
IMP
AthAt2g06210
SceS000005505
GO:0033523 histone H2B ubiquitination P
IDA
HsaCTR9
GO:0040007 growth P
IMP
CelWBGene00007184
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IMP
AthAt2g06210

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
101640

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) tpr1
(SPAC27D7.14c)		 GI:19115532 O42668
Saccharomyces cerevisiae (Sce) CTR9
(S000005505)		 GI:6324427 P89105
Kluyveromyces lactis (Kla) KLLA0E01914g GI:50308067
Eremothecium gossypii (Ego) AGOS_AGR398W GI:45201494
Magnaporthe grisea (Mgr) MGG_06462 GI:39977119
Neurospora crassa (Ncr) NCU00095.1 GI:32403136


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005505
SpoSPAC27D7.14c
GO:0005816 spindle pole body C
IDA
SpoSPAC27D7.14c
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000005505
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0003674 molecular_function F
ND
SpoSPAC27D7.14c
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000005505
GO:0045142 triplex DNA binding F
IDA
SceS000005505
GO:0006362 RNA elongation from RNA polymerase I
promoter		 P
IMP
SceS000005505
GO:0006366 transcription from RNA polymerase II
promoter		 P
IPI
SceS000005505
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0006813 potassium ion transport P
IMP
SpoSPAC27D7.14c
GO:0007059 chromosome segregation P
IMP
SceS000005505
GO:0016571 histone methylation P
IMP
SceS000005505

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2398

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga3665 ENSANGP00000018144
Ashbya gossypii (Ago) ago4709 AGR398W
Arabidopsis thaliana (Ath) ath7999 At2g06210.1
Arabidopsis thaliana (Ath) ath8000 At2g06210.2
Caenorhabditis elegans (Cel) cel513 B0464.2
(CE20456;
WBGene00007184)
Candida glabrata (Cgl) cgl263 CAGL0B01375g
Cryptococcus neoformans (Cne) cne4619 186.m03462
Dictyostelium discoideum (Ddi) ddi12288 DDB0215333
Debaryomyces hansenii (Dha) dha261 DEHA0A05874g
Drosophila melanogaster (Dme) dme7366 CG2469-PA
(FBgn0035205)
Drosophila melanogaster (Dme) dme7365 CG2469-PB
(FBgn0035205)
Drosophila melanogaster (Dme) dme6692 CG9899-PA
(FBgn0034829)
Danio rerio (Dre) dre13855 ENSDARP00000016047
Encephalitozoon cuniculi (Ecu) ecu1599 19074372
Takifugu rubripes (Fru) fru29924 SINFRUP00000145185
Takifugu rubripes (Fru) fru29925 SINFRUP00000170476
Takifugu rubripes (Fru) fru29926 SINFRUP00000171970
Gallus gallus (Gga) gga18763 ENSGALP00000009001
Gallus gallus (Gga) gga18761 ENSGALP00000009002
(CTR9)
Homo sapiens (Hsa) hsa5201 ENSP00000355013
(CTR9)		 Q6PD62
Homo sapiens (Hsa) hsa5202 ENSP00000355168
Kluyveromyces lactis (Kla) kla3033 KLLA0E01914g
Mus musculus (Mmu) mmu24901 ENSMUSP00000005749
(MGI:109345)		 Q62018-1
Neurospora crassa (Ncr) ncr93 NCU00095.2
Oryza sativa (Osa) osa72319 7054.m00114
Rattus norvegicus (Rno) rno2772 ENSRNOP00000023741
(RGD:1311097)		 Q32PZ5
Saccharomyces cerevisiae (Sce) sce5703 YOL145C
(S000005505)
Schizosaccharomyces pombe (Spo) spo3923 SPAC27D7.14c O42668
Yarrowia lipolytica (Yli) yli512 YALI0A15686g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
MmuMGI:109345
SceS000005505
SpoSPAC27D7.14c
GO:0005816 spindle pole body C
IDA
SpoSPAC27D7.14c
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000005505
GO:0016020 membrane C
IDA
AthAt2g06210
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0003674 molecular_function F
ND
SpoSPAC27D7.14c
GO:0005515 protein binding F
IPI
MmuMGI:109345
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000005505
GO:0042169 SH2 domain binding F
IDA
MmuMGI:109345
GO:0045142 triplex DNA binding F
IDA
SceS000005505
GO:0000003 reproduction P
IMP
CelWBGene00007184
GO:0002119 nematode larval development P
IMP
CelWBGene00007184
GO:0006362 RNA elongation from RNA polymerase I
promoter		 P
IMP
SceS000005505
GO:0006366 transcription from RNA polymerase II
promoter		 P
IPI
SceS000005505
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0006813 potassium ion transport P
IMP
SpoSPAC27D7.14c
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007184
GO:0007059 chromosome segregation P
IMP
SceS000005505
GO:0008150 biological_process P
ND
MmuMGI:109345
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007184
GO:0009910 negative regulation of flower development P
IMP
AthAt2g06210
GO:0016571 histone methylation P
IMP
AthAt2g06210
SceS000005505
GO:0040007 growth P
IMP
CelWBGene00007184
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IMP
AthAt2g06210

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC27D7.14c
(O42668)		 YOL145C
(S000005505)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005505
SpoSPAC27D7.14c
GO:0005816 spindle pole body C
IDA
SpoSPAC27D7.14c
GO:0008023 transcription elongation factor
complex		 C
IPI
SceS000005505
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0003674 molecular_function F
ND
SpoSPAC27D7.14c
GO:0016944 RNA polymerase II transcription elongation factor
activity		 F
IPI
SceS000005505
GO:0045142 triplex DNA binding F
IDA
SceS000005505
GO:0006362 RNA elongation from RNA polymerase I
promoter		 P
IMP
SceS000005505
GO:0006366 transcription from RNA polymerase II
promoter		 P
IPI
SceS000005505
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IPI
SceS000005505
ISS
SpoSPAC27D7.14c
GO:0006813 potassium ion transport P
IMP
SpoSPAC27D7.14c
GO:0007059 chromosome segregation P
IMP
SceS000005505
GO:0016571 histone methylation P
IMP
SceS000005505

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GO info in one table:

s.khadayate@ucl.ac.uk