YOGY Home YOGY Help

Search term: YOR006C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name TSR3
SGD link S000005532
Alternative ID YOR006C
Description Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus
Synonyms YOR006C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3154 ACDHYPE

KOGs classification KOGs description
POORLY CHARACTERIZED Uncharacterized conserved protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g10070 GI:15238053
Caenorhabditis elegans (Cel) CE25895_1 GI:17540582
Caenorhabditis elegans (Cel) CE26368_1 GI:17540584
Drosophila melanogaster (Dme) 7299988 GI:7299988
Homo sapiens (Hsa) Hs18598168 GI:18598168
Saccharomyces cerevisiae (Sce) YOR006c
(S000005532)		 GI:6324579 Q12094
Schizosaccharomyces pombe (Spo) SPAC1F3.04c GI:19113919 Q10409
Encephalitozoon cuniculi (Ecu) ECU09g1520 GI:19173273


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt5g10070
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005737 cytoplasm C
IDA
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005829 cytosol C
IDA
AthAt5g10070
GO:0003674 molecular_function F
ND
AthAt5g10070
SceS000005532
GO:0046872 metal ion binding F
ISS
SpoSPAC1F3.04c
GO:0008150 biological_process P
ND
AthAt5g10070
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005532
ISS
SpoSPAC1F3.04c

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6922

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) C16orf42 GI:47777330
Canis familiaris (Cfa) LOC479890 GI:57088115
Mus musculus (Mmu) 0610007P22Rik
(MGI:1915577)		 GI:21489947 Q05CB2
Rattus norvegicus (Rno) RGD1565744 GI:109487891
Gallus gallus (Gga) C16orf42 GI:50755763
Drosophila melanogaster (Dme) CG4338
(FBgn0038313)		 GI:24647066
Anopheles gambiae (Aga) AgaP_AGAP008424 GI:158296670
Caenorhabditis elegans (Cel) F52C12.2
(CE31534;
WBGene00018679)		 GI:25148466
Schizosaccharomyces pombe (Spo) SPAC1F3.04c GI:19113919 Q10409
Saccharomyces cerevisiae (Sce) TSR3
(S000005532)		 GI:6324579 Q12094
Kluyveromyces lactis (Kla) KLLA0D01111g GI:50306295
Eremothecium gossypii (Ego) AGOS_ACR007W GI:45185694
Magnaporthe grisea (Mgr) MGG_00851 GI:39974005
Neurospora crassa (Ncr) NCU06104.1 GI:32410957
Arabidopsis thaliana (Ath) AT5G10070 GI:42573329
Oryza sativa (Osa) Os03g0195200 GI:115451311


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1915577
GO:0005634 nucleus C
IDA
AthAt5g10070
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005737 cytoplasm C
IDA
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005829 cytosol C
IDA
AthAt5g10070
GO:0003674 molecular_function F
ND
AthAt5g10070
MmuMGI:1915577
SceS000005532
GO:0046872 metal ion binding F
ISS
SpoSPAC1F3.04c
GO:0008150 biological_process P
ND
AthAt5g10070
MmuMGI:1915577
GO:0019915 lipid storage P
IMP
CelWBGene00018679
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005532
ISS
SpoSPAC1F3.04c

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2188

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10428 ENSANGP00000019242
Ashbya gossypii (Ago) ago1055 ACR007W
Arabidopsis thaliana (Ath) ath23207 At5g10070.1
Arabidopsis thaliana (Ath) ath23208 At5g10070.2
Caenorhabditis elegans (Cel) cel9812 F52C12.2
(CE31534;
WBGene00018679)
Candida glabrata (Cgl) cgl1060 CAGL0E02717g
Cryptococcus neoformans (Cne) cne5683 179.m00546
Dictyostelium discoideum (Ddi) ddi284 DDB0189570
Debaryomyces hansenii (Dha) dha5915 DEHA0G04917g
Drosophila melanogaster (Dme) dme12716 CG4338-PA
(FBgn0038313)
Danio rerio (Dre) dre12357 ENSDARP00000022684
Encephalitozoon cuniculi (Ecu) ecu1424 19173273
Takifugu rubripes (Fru) fru16874 SINFRUP00000146154
Gallus gallus (Gga) gga6665 ENSGALP00000010371
(C16orf42)
Homo sapiens (Hsa) hsa11424 ENSP00000007390
(C16orf42)		 Q9UJK0
Kluyveromyces lactis (Kla) kla2119 KLLA0D01111g
Mus musculus (Mmu) mmu11146 ENSMUSP00000068511
(MGI:1915577)		 Q5HZH2
Neurospora crassa (Ncr) ncr5932 NCU06104.2
Oryza sativa (Osa) osa66040 6884.m00138
Plasmodium falciparum (Pfa) pfa4980 PFL0985c
Rattus norvegicus (Rno) rno4662 ENSRNOP00000024058
(RGD:1565744)
Saccharomyces cerevisiae (Sce) sce5734 YOR006C
(S000005532)
Schizosaccharomyces pombe (Spo) spo4473 SPAC1F3.04c Q10409
Yarrowia lipolytica (Yli) yli3505 YALI0D19118g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1915577
GO:0005634 nucleus C
IDA
AthAt5g10070
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005737 cytoplasm C
IDA
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005829 cytosol C
IDA
AthAt5g10070
GO:0003674 molecular_function F
ND
AthAt5g10070
MmuMGI:1915577
SceS000005532
GO:0046872 metal ion binding F
ISS
SpoSPAC1F3.04c
GO:0008150 biological_process P
ND
AthAt5g10070
MmuMGI:1915577
GO:0019915 lipid storage P
IMP
CelWBGene00018679
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005532
ISS
SpoSPAC1F3.04c

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC1F3.04c
(Q10409)		 YOR006C
(S000005532)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0005737 cytoplasm C
IDA
SceS000005532
ISS
SpoSPAC1F3.04c
GO:0003674 molecular_function F
ND
SceS000005532
GO:0046872 metal ion binding F
ISS
SpoSPAC1F3.04c
GO:0030490 maturation of SSU-rRNA P
IMP
SceS000005532
ISS
SpoSPAC1F3.04c

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk