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Search term: YOR063W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPL3
SGD link S000005589
Alternative ID YOR063W
Description Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribosomal proteins; involved in the replication and maintenance of killer double stranded RNA virus
Synonyms YOR063W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0746 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING 60S ribosomal protein L3 and related proteins

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g43170 GI:15218306
Arabidopsis thaliana (Ath) At1g61580 GI:15220533
Caenorhabditis elegans (Cel) CE05598
(WBGene00004414)		 GI:17553058
Drosophila melanogaster (Dme) 7299419 GI:7299419
Drosophila melanogaster (Dme) 7299421 GI:7299421
Drosophila melanogaster (Dme) 7299422 GI:7299422
Homo sapiens (Hsa) Hs17452839 GI:17452839
Homo sapiens (Hsa) Hs17466365 GI:17466365
Homo sapiens (Hsa) Hs17472282 GI:17472282
Homo sapiens (Hsa) Hs18564863 GI:18564863
Homo sapiens (Hsa) Hs18566516 GI:18566516
Homo sapiens (Hsa) Hs18583607 GI:18583607
Homo sapiens (Hsa) Hs18596957 GI:18596957
Homo sapiens (Hsa) Hs20472413 GI:20472413
Homo sapiens (Hsa) Hs22050357 GI:22050357
Homo sapiens (Hsa) Hs22055156 GI:22055156
Homo sapiens (Hsa) Hs4506649
(RPL3)		 GI:4506649 P39023
Homo sapiens (Hsa) Hs4826988
(RPL3L)		 GI:4826988 Q92901
Saccharomyces cerevisiae (Sce) YOR063w
(S000005589)		 GI:6324637 P14126
Schizosaccharomyces pombe (Spo) SPAC17A5.03 GI:19114383 P40372
Schizosaccharomyces pombe (Spo) SPAPB8E5.06c GI:19115692 P36584
Encephalitozoon cuniculi (Ecu) ECU03g1220 GI:19173079 Q8SQI3
Encephalitozoon cuniculi (Ecu) ECU09g1000 GI:19173222
Arabidopsis thaliana (Ath) At1g43170 GI:15218306
Arabidopsis thaliana (Ath) At1g61580 GI:15220533
Caenorhabditis elegans (Cel) CE05598
(WBGene00004414)		 GI:17553058
Drosophila melanogaster (Dme) 7299419 GI:7299419
Drosophila melanogaster (Dme) 7299421 GI:7299421
Drosophila melanogaster (Dme) 7299422 GI:7299422
Homo sapiens (Hsa) Hs17452839 GI:17452839
Homo sapiens (Hsa) Hs17466365 GI:17466365
Homo sapiens (Hsa) Hs17472282 GI:17472282
Homo sapiens (Hsa) Hs18564863 GI:18564863
Homo sapiens (Hsa) Hs18566516 GI:18566516
Homo sapiens (Hsa) Hs18583607 GI:18583607
Homo sapiens (Hsa) Hs18596957 GI:18596957
Homo sapiens (Hsa) Hs20472413 GI:20472413
Homo sapiens (Hsa) Hs22050357 GI:22050357
Homo sapiens (Hsa) Hs22055156 GI:22055156
Homo sapiens (Hsa) Hs4506649
(RPL3)		 GI:4506649 P39023
Homo sapiens (Hsa) Hs4826988
(RPL3L)		 GI:4826988 Q92901
Saccharomyces cerevisiae (Sce) YOR063w
(S000005589)		 GI:6324637 P14126
Schizosaccharomyces pombe (Spo) SPAC17A5.03 GI:19114383 P40372
Schizosaccharomyces pombe (Spo) SPAPB8E5.06c GI:19115692 P36584
Encephalitozoon cuniculi (Ecu) ECU03g1220 GI:19173079 Q8SQI3
Encephalitozoon cuniculi (Ecu) ECU09g1000 GI:19173222


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005618 cell wall C
IDA
AthAt1g43170
GO:0005730 nucleolus C
IDA
AthAt1g43170
TAS
HsaRPL3
GO:0005737 cytoplasm C
IDA
HsaRPL3
GO:0005773 vacuole C
IDA
AthAt1g43170
GO:0005829 cytosol C
EXP
HsaRPL3L
RPL3
IDA
SpoSPAC17A5.03
SPAPB8E5.06c
GO:0005840 ribosome C
ISS
AthAt1g43170
At1g61580
GO:0005886 plasma membrane C
IDA
AthAt1g43170
GO:0016020 membrane C
IDA
AthAt1g61580
At1g43170
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthAt1g61580
At1g43170
ISS
SpoSPAPB8E5.06c
SPAC17A5.03
TAS
AthAt1g61580
At1g43170
HsaRPL3
SceS000005589
GO:0022626 cytosolic ribosome C
IDA
AthAt1g43170
GO:0003723 RNA binding F
TAS
HsaRPL3L
RPL3
GO:0003735 structural constituent of ribosome F
ISS
AthAt1g43170
At1g61580
SpoSPAC17A5.03
SPAPB8E5.06c
TAS
SceS000005589
GO:0005515 protein binding F
IPI
HsaRPL3
GO:0000003 reproduction P
IMP
CelWBGene00004414
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000005589
ISS
SpoSPAC17A5.03
GO:0002119 nematode larval development P
IMP
CelWBGene00004414
GO:0006412 translation P
ISS
AthAt1g61580
At1g43170
SpoSPAC17A5.03
SPAPB8E5.06c
TAS
HsaRPL3L
RPL3
SceS000005589
GO:0006414 translational elongation P
EXP
HsaRPL3L
RPL3
GO:0006417 regulation of translation P
RCA
SceS000005589
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004414
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt1g43170
GO:0040007 growth P
IMP
CelWBGene00004414
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004414

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
747

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RPL3 GI:4506649 P39023
Pan troglodytes (Ptr) RPL3 GI:114686508
Mus musculus (Mmu) Rpl3
(MGI:1351605)		 GI:7305441 P27659
Mus musculus (Mmu) Gm16468 GI:149270989
Rattus norvegicus (Rno) Rpl3
(RGD:735105)		 GI:38454246
Gallus gallus (Gga) RPL3 GI:57525400
Drosophila melanogaster (Dme) RpL3
(FBgn0020910)		 GI:17737907
Anopheles gambiae (Aga) AgaP_AGAP003556 GI:158291770
Caenorhabditis elegans (Cel) rpl-3
(CE05598;
WBGene00004414)		 GI:71984538
Schizosaccharomyces pombe (Spo) rpl3 GI:19114383
Schizosaccharomyces pombe (Spo) rpl3-2 GI:19115692
Saccharomyces cerevisiae (Sce) RPL3
(S000005589)		 GI:6324637 P14126
Kluyveromyces lactis (Kla) KLLA0F16511g GI:50311593
Eremothecium gossypii (Ego) AGOS_ADR206W GI:45188079
Magnaporthe grisea (Mgr) MGG_03193 GI:145608344
Neurospora crassa (Ncr) NCU06843.1 GI:32413298
Arabidopsis thaliana (Ath) ARP1 GI:42571751
Arabidopsis thaliana (Ath) RPL3B GI:15220533
Oryza sativa (Osa) Os12g0167900 GI:115487526
Oryza sativa (Osa) Os11g0168200 GI:115484365
Plasmodium falciparum (Pfa) PF10_0272 GI:124802670


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthARP1
MmuMGI:1351605
GO:0005618 cell wall C
IDA
AthARP1
GO:0005730 nucleolus C
IDA
AthARP1
TAS
HsaRPL3
GO:0005737 cytoplasm C
IDA
HsaRPL3
GO:0005773 vacuole C
IDA
AthARP1
GO:0005829 cytosol C
EXP
HsaRPL3
GO:0005840 ribosome C
ISS
AthRPL3B
ARP1
GO:0005886 plasma membrane C
IDA
AthARP1
GO:0016020 membrane C
IDA
AthARP1
RPL3B
GO:0022625 cytosolic large ribosomal subunit C
IDA
AthARP1
RPL3B
ISS
DmeFBgn0020910
PfaPF10_0272
NAS
DmeFBgn0020910
TAS
AthRPL3B
ARP1
HsaRPL3
SceS000005589
GO:0022626 cytosolic ribosome C
IDA
AthARP1
NAS
DmeFBgn0020910
GO:0003674 molecular_function F
ND
AthARP1
MmuMGI:1351605
GO:0003723 RNA binding F
TAS
HsaRPL3
GO:0003735 structural constituent of ribosome F
ISS
AthARP1
RPL3B
DmeFBgn0020910
NAS
DmeFBgn0020910
TAS
SceS000005589
GO:0005515 protein binding F
IPI
HsaRPL3
GO:0000003 reproduction P
IMP
CelWBGene00004414
GO:0000022 mitotic spindle elongation P
IMP
DmeFBgn0020910
GO:0000027 ribosomal large subunit assembly P
IMP
SceS000005589
GO:0002119 nematode larval development P
IMP
CelWBGene00004414
GO:0006412 translation P
ISS
AthRPL3B
ARP1
DmeFBgn0020910
NAS
DmeFBgn0020910
TAS
HsaRPL3
SceS000005589
GO:0006414 translational elongation P
EXP
HsaRPL3
GO:0006417 regulation of translation P
RCA
SceS000005589
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0020910
GO:0008150 biological_process P
ND
MmuMGI:1351605
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004414
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthARP1
GO:0040007 growth P
IMP
CelWBGene00004414
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004414
GO:0051252 regulation of RNA metabolic process P
NAS
AthARP1

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_734

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5995 ENSANGP00000011028
Ashbya gossypii (Ago) ago1947 ADR206W
Arabidopsis thaliana (Ath) ath3821 At1g43170.1
Arabidopsis thaliana (Ath) ath3822 At1g43170.2
Arabidopsis thaliana (Ath) ath5347 At1g61580.1
Caenorhabditis elegans (Cel) cel6140 F13B10.2a
(CE05598;
WBGene00004414)
Caenorhabditis elegans (Cel) cel6142 F13B10.2d
(CE36997)
Candida glabrata (Cgl) cgl1713 CAGL0G02079g
Cryptococcus neoformans (Cne) cne3626 176.m02360
Dictyostelium discoideum (Ddi) ddi13590 DDB0191094
Debaryomyces hansenii (Dha) dha759 DEHA0B01782g
Drosophila melanogaster (Dme) dme12004 CG4863-PA
(FBgn0020910)
Drosophila melanogaster (Dme) dme12007 CG4863-PB
(FBgn0020910)
Drosophila melanogaster (Dme) dme12006 CG4863-PE
(FBgn0020910)
Danio rerio (Dre) dre17466 ENSDARP00000003700
(rpl3)		 Q5BJJ2
Danio rerio (Dre) dre17467 ENSDARP00000025924
Encephalitozoon cuniculi (Ecu) ecu486 19173079
Encephalitozoon cuniculi (Ecu) ecu1373 19173222
Takifugu rubripes (Fru) fru31904 SINFRUP00000137498
Gallus gallus (Gga) gga6565 ENSGALP00000008744
(RPL3L)
Gallus gallus (Gga) gga892 ENSGALP00000019852
(RPL3)
Homo sapiens (Hsa) hsa11461 ENSP00000268661
(RPL3L)		 Q92901
Homo sapiens (Hsa) hsa21693 ENSP00000346001
(RPL3)		 P39023
Homo sapiens (Hsa) hsa21692 ENSP00000349435
Kluyveromyces lactis (Kla) kla4822 KLLA0F16511g
Mus musculus (Mmu) mmu18635 ENSMUSP00000078015
Mus musculus (Mmu) mmu9320 ENSMUSP00000080354
(MGI:1351605)		 Q3T9U9
Mus musculus (Mmu) mmu28715 ENSMUSP00000080772
Neurospora crassa (Ncr) ncr6657 NCU06843.2
Oryza sativa (Osa) osa26751 4141.m00175
Oryza sativa (Osa) osa46549 5709.m00138
Oryza sativa (Osa) osa54198 6061.m00109
Oryza sativa (Osa) osa64376 6801.m00047
Plasmodium falciparum (Pfa) pfa490 PF10_0272
Rattus norvegicus (Rno) rno27420 ENSRNOP00000022949
(RGD:735105)		 P21531
Saccharomyces cerevisiae (Sce) sce5797 YOR063W
(S000005589)
Schizosaccharomyces pombe (Spo) spo1631 SPAC17A5.03 P40372
Schizosaccharomyces pombe (Spo) spo3173 SPAPB8E5.06c P36584
Yarrowia lipolytica (Yli) yli2577 YALI0C21560g