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Search term: YOR106W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VAM3
SGD link S000005632
Alternative ID YOR106W
Description Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein trafficking; member of the syntaxin family of proteins
Synonyms YOR106W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0811 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g32270_2 GI:15222626
Arabidopsis thaliana (Ath) At4g17730 GI:15236626
Arabidopsis thaliana (Ath) At5g16830 GI:15237418
Caenorhabditis elegans (Cel) CE15978 GI:17507219
Caenorhabditis elegans (Cel) CE18300
(WBGene00012150)		 GI:17509425 O62387
Drosophila melanogaster (Dme) 7292492
(FBgn0035540)		 GI:17737535
Drosophila melanogaster (Dme) 7294503
(FBgn0036341)		 GI:17647977
Drosophila melanogaster (Dme) 7296438 GI:7296438
Homo sapiens (Hsa) Hs20533698 GI:20533698
Homo sapiens (Hsa) Hs21450719 GI:16550526 Q6P186
Homo sapiens (Hsa) Hs4507295 GI:4507295
Homo sapiens (Hsa) Hs8923604 GI:8923604
Saccharomyces cerevisiae (Sce) YOR036w
(S000005562)		 GI:6324610 P32854
Saccharomyces cerevisiae (Sce) YOR106w
(S000005632)		 GI:6324680 Q12241
Schizosaccharomyces pombe (Spo) SPBC31E1.04 GI:19111892 O94651
Arabidopsis thaliana (Ath) At1g32270_2 GI:15222626
Arabidopsis thaliana (Ath) At4g17730 GI:15236626
Arabidopsis thaliana (Ath) At5g16830 GI:15237418
Caenorhabditis elegans (Cel) CE15978 GI:17507219
Caenorhabditis elegans (Cel) CE18300
(WBGene00012150)		 GI:17509425 O62387
Drosophila melanogaster (Dme) 7292492
(FBgn0035540)		 GI:17737535
Drosophila melanogaster (Dme) 7294503
(FBgn0036341)		 GI:17647977
Drosophila melanogaster (Dme) 7296438 GI:7296438
Homo sapiens (Hsa) Hs20533698 GI:20533698
Homo sapiens (Hsa) Hs21450719 GI:16550526 Q6P186
Homo sapiens (Hsa) Hs4507295 GI:4507295
Homo sapiens (Hsa) Hs8923604 GI:8923604
Saccharomyces cerevisiae (Sce) YOR036w
(S000005562)		 GI:6324610 P32854
Saccharomyces cerevisiae (Sce) YOR106w
(S000005632)		 GI:6324680 Q12241
Schizosaccharomyces pombe (Spo) SPBC31E1.04 GI:19111892 O94651


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000005632
GO:0005768 endosome C
IMP
SceS000005562
GO:0005770 late endosome C
IDA
AthAt5g16830
TAS
AthAt5g16830
GO:0005774 vacuolar membrane C
IDA
SceS000005632
GO:0005783 endoplasmic reticulum C
IDA
SpoSPBC31E1.04
GO:0005794 Golgi apparatus C
IMP
SceS000005562
ISS
SpoSPBC31E1.04
RCA
SceS000005632
GO:0005886 plasma membrane C
IDA
AthAt4g17730
ISS
DmeFBgn0036341
FBgn0035540
GO:0016020 membrane C
IDA
AthAt5g16830
GO:0016021 integral to membrane C
TAS
AthAt1g32270
GO:0030140 trans-Golgi network transport vesicle C
IDA
AthAt5g16830
TAS
AthAt5g16830
GO:0044431 Golgi apparatus part C
RCA
SceS000005562
GO:0005484 SNAP receptor activity F
IDA
AthAt5g16830
SceS000005562
IMP
AthAt5g16830
SceS000005562
ISS
DmeFBgn0036341
FBgn0035540
SceS000005562
TAS
AthAt5g16830
At4g17730
SceS000005632
SpoSPBC31E1.04
GO:0005543 phospholipid binding F
RCA
SceS000005632
GO:0008289 lipid binding F
RCA
SceS000005632
GO:0000011 vacuole inheritance P
IMP
SceS000005562
GO:0000281 cytokinesis after mitosis P
IMP
DmeFBgn0036341
GO:0006623 protein targeting to vacuole P
IDA
AthAt5g16830
GO:0006886 intracellular protein transport P
IC
SpoSPBC31E1.04
TAS
AthAt4g17730
At5g16830
GO:0006891 intra-Golgi vesicle-mediated transport P
TAS
AthAt1g32270
GO:0006896 Golgi to vacuole transport P
IMP
SceS000005562
TAS
AthAt5g16830
SceS000005632
GO:0006906 vesicle fusion P
RCA
SceS000005562
TAS
SceS000005632
GO:0006914 autophagy P
RCA
SceS000005562
GO:0006944 cellular membrane fusion P
ISS
AthAt1g32270
RCA
SceS000005562
S000005632
TAS
AthAt5g16830
At4g17730
GO:0007033 vacuole organization P
RCA
SceS000005632
GO:0007067 mitosis P
IMP
DmeFBgn0036341
GO:0007110 cytokinesis after meiosis I P
IMP
DmeFBgn0036341
GO:0007140 male meiosis P
IMP
DmeFBgn0036341
GO:0007143 female meiosis P
IMP
DmeFBgn0036341
GO:0007269 neurotransmitter secretion P
ISS
DmeFBgn0035540
FBgn0036341
GO:0016044 cellular membrane organization P
RCA
SceS000005562
GO:0016050 vesicle organization P
RCA
SceS000005562
GO:0016081 synaptic vesicle docking involved in
exocytosis		 P
ISS
DmeFBgn0035540
FBgn0036341
GO:0016192 vesicle-mediated transport P
ISS
DmeFBgn0035540
FBgn0036341
TAS
SpoSPBC31E1.04
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005632
GO:0045324 late endosome to vacuole transport P
IMP
AthAt5g16830
GO:0048278 vesicle docking P
IGI
SceS000005632
GO:0048284 organelle fusion P
RCA
SceS000005562
GO:0051469 vesicle fusion with vacuole P
IGI
SceS000005632

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40267

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) VAM3
(S000005632)		 GI:6324680 Q12241
Kluyveromyces lactis (Kla) KLLA0C13233g GI:50305659
Eremothecium gossypii (Ego) AGOS_AFL232W GI:45198289


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000005632
GO:0005774 vacuolar membrane C
IDA
SceS000005632
GO:0005794 Golgi apparatus C
RCA
SceS000005632
GO:0005484 SNAP receptor activity F
TAS
SceS000005632
GO:0005543 phospholipid binding F
RCA
SceS000005632
GO:0008289 lipid binding F
RCA
SceS000005632
GO:0006896 Golgi to vacuole transport P
TAS
SceS000005632
GO:0006906 vesicle fusion P
TAS
SceS000005632
GO:0006944 cellular membrane fusion P
RCA
SceS000005632
GO:0007033 vacuole organization P
RCA
SceS000005632
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005632
GO:0048278 vesicle docking P
IGI
SceS000005632
GO:0051469 vesicle fusion with vacuole P
IGI
SceS000005632

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_664

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8866 ENSANGP00000014118
Anopheles gambiae (Aga) aga956 ENSANGP00000021184
Anopheles gambiae (Aga) aga8865 ENSANGP00000029502
Ashbya gossypii (Ago) ago1139 ACR092C
Ashbya gossypii (Ago) ago2963 AFL232W
Arabidopsis thaliana (Ath) ath19636 At4g17730.1
Arabidopsis thaliana (Ath) ath23915 At5g16830.1
Arabidopsis thaliana (Ath) ath26554 At5g46860.1
Caenorhabditis elegans (Cel) cel8293 F36F2.4
(CE40328;
WBGene00009478)
Candida glabrata (Cgl) cgl1830 CAGL0G04807g
Candida glabrata (Cgl) cgl2569 CAGL0I01012g
Cryptococcus neoformans (Cne) cne4717 186.m03575
Dictyostelium discoideum (Ddi) ddi6126 DDB0185321
Dictyostelium discoideum (Ddi) ddi6470 DDB0218182
Dictyostelium discoideum (Ddi) ddi12996 DDB0231537
Dictyostelium discoideum (Ddi) ddi12339 DDB0231543
Debaryomyces hansenii (Dha) dha4939 DEHA0F12540g
Debaryomyces hansenii (Dha) dha6093 DEHA0G08767g
Drosophila melanogaster (Dme) dme9340 CG11278-PA
(FBgn0036341)
Drosophila melanogaster (Dme) dme10583 CG5081-PA
(FBgn0033583)
Drosophila melanogaster (Dme) dme10584 CG5081-PB
(FBgn0033583)
Danio rerio (Dre) dre16930 ENSDARP00000005842
Danio rerio (Dre) dre16929 ENSDARP00000015140
Danio rerio (Dre) dre10263 ENSDARP00000040301
Danio rerio (Dre) dre10264 ENSDARP00000041577
(zgc:86632)		 Q6IQS7
Danio rerio (Dre) dre13078 ENSDARP00000049331
(stx7l)		 Q5RFY7
Danio rerio (Dre) dre13077 ENSDARP00000050719
Takifugu rubripes (Fru) fru26884 SINFRUP00000135940
Takifugu rubripes (Fru) fru9596 SINFRUP00000152980
Takifugu rubripes (Fru) fru9597 SINFRUP00000168566
Gallus gallus (Gga) gga12784 ENSGALP00000001023
Gallus gallus (Gga) gga12783 ENSGALP00000001024
(STX12)
Gallus gallus (Gga) gga24312 ENSGALP00000004616
(STX7)		 Q5ZMP2
Gallus gallus (Gga) gga24313 ENSGALP00000004617
(STX7)
Homo sapiens (Hsa) hsa663 ENSP00000236419
Homo sapiens (Hsa) hsa27756 ENSP00000309600
(STX7)		 B4DWC2
Kluyveromyces lactis (Kla) kla1789 KLLA0C13233g
Kluyveromyces lactis (Kla) kla3935 KLLA0E21857g
Mus musculus (Mmu) mmu1937 ENSMUSP00000020174
(MGI:1858210)		 Q8BH40
Mus musculus (Mmu) mmu19035 ENSMUSP00000030698
(MGI:1931027)		 Q9ER00
Neurospora crassa (Ncr) ncr6591 NCU06777.2
Oryza sativa (Osa) osa9588 2735.m00154
Oryza sativa (Osa) osa9640 2736.m00153
Rattus norvegicus (Rno) rno24079 ENSRNOP00000017227
(RGD:620977)		 O70319
Rattus norvegicus (Rno) rno252 ENSRNOP00000021318
(RGD:619747)		 O70257
Saccharomyces cerevisiae (Sce) sce5770 YOR036W
(S000005562)
Saccharomyces cerevisiae (Sce) sce5842 YOR106W
(S000005632)
Schizosaccharomyces pombe (Spo) spo169 SPBC31E1.04 O94651
Yarrowia lipolytica (Yli) yli2609 YALI0C22275g
Yarrowia lipolytica (Yli) yli4351 YALI0E11825g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000324 fungal-type vacuole C
IDA
SceS000005632
GO:0000325 plant-type vacuole C
IDA
AthAt5g46860
GO:0005768 endosome C
IMP
SceS000005562
ISO
MmuMGI:1858210
GO:0005770 late endosome C
IDA
AthAt5g16830
TAS
AthAt5g16830
At5g46860
GO:0005773 vacuole C
IDA
AthAt5g46860
GO:0005774 vacuolar membrane C
IDA
SceS000005632
GO:0005783 endoplasmic reticulum C
IDA
SpoSPBC31E1.04
GO:0005794 Golgi apparatus C
IMP
SceS000005562
ISS
SpoSPBC31E1.04
RCA
SceS000005632
GO:0005886 plasma membrane C
IDA
AthAt4g17730
ISS
DmeFBgn0036341
GO:0009705 plant-type vacuole membrane C
IDA
AthAt5g46860
GO:0016020 membrane C
IDA
AthAt5g16830
GO:0016021 integral to membrane C
ISO
MmuMGI:1858210
GO:0030140 trans-Golgi network transport vesicle C
IDA
AthAt5g16830
TAS
AthAt5g46860
At5g16830
GO:0031201 SNARE complex C
ISO
MmuMGI:1858210
GO:0044431 Golgi apparatus part C
RCA
SceS000005562
GO:0005484 SNAP receptor activity F
IDA
AthAt5g16830
SceS000005562
IMP
AthAt5g16830
SceS000005562
ISS
DmeFBgn0036341
SceS000005562
TAS
AthAt5g46860
At5g16830
At4g17730
SceS000005632
SpoSPBC31E1.04
GO:0005515 protein binding F
IPI
MmuMGI:1931027
MGI:1858210
GO:0005543 phospholipid binding F
RCA
SceS000005632
GO:0008289 lipid binding F
RCA
SceS000005632
GO:0000003 reproduction P
IMP
CelWBGene00009478
GO:0000011 vacuole inheritance P
IMP
SceS000005562
GO:0000281 cytokinesis after mitosis P
IMP
DmeFBgn0036341
GO:0000903 cell morphogenesis during vegetative growth
phase		 P
IMP
AthAt5g46860
GO:0006623 protein targeting to vacuole P
IDA
AthAt5g16830
GO:0006886 intracellular protein transport P
IC
SpoSPBC31E1.04
TAS
AthAt4g17730
At5g16830
At5g46860
GO:0006896 Golgi to vacuole transport P
IMP
SceS000005562
TAS
AthAt5g16830
SceS000005632
GO:0006906 vesicle fusion P
RCA
SceS000005562
TAS
SceS000005632
GO:0006914 autophagy P
RCA
SceS000005562
GO:0006944 cellular membrane fusion P
RCA
SceS000005562
S000005632
TAS
AthAt5g16830
At5g46860
At4g17730
GO:0007033 vacuole organization P
IGI
AthAt5g46860
RCA
SceS000005632
GO:0007067 mitosis P
IMP
DmeFBgn0036341
GO:0007110 cytokinesis after meiosis I P
IMP
DmeFBgn0036341
GO:0007140 male meiosis P
IMP
DmeFBgn0036341
GO:0007143 female meiosis P
IMP
DmeFBgn0036341
GO:0007269 neurotransmitter secretion P
ISS
DmeFBgn0036341
GO:0009660 amyloplast organization P
IMP
AthAt5g46860
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00009478
GO:0009959 negative gravitropism P
IMP
AthAt5g46860
GO:0010118 stomatal movement P
IMP
AthAt5g46860
GO:0016044 cellular membrane organization P
RCA
SceS000005562
GO:0016050 vesicle organization P
RCA
SceS000005562
GO:0016081 synaptic vesicle docking involved in
exocytosis		 P
ISS
DmeFBgn0036341
GO:0016192 vesicle-mediated transport P
ISO
MmuMGI:1858210
ISS
DmeFBgn0036341
TAS
SpoSPBC31E1.04
GO:0034727 piecemeal microautophagy of nucleus P
IMP
SceS000005632
GO:0045324 late endosome to vacuole transport P
IMP
AthAt5g16830
GO:0048278 vesicle docking P
IGI
SceS000005632
GO:0048284 organelle fusion P
RCA
SceS000005562
GO:0051469 vesicle fusion with vacuole P
IGI
SceS000005632

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s.khadayate@ucl.ac.uk