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Search term: YOR151C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPB2
SGD link S000005677
Alternative ID YOR151C
Description RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subunit
Synonyms YOR151C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0214 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase II, second largest subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g18090 GI:15229585
Arabidopsis thaliana (Ath) At3g23780 GI:15229516
Arabidopsis thaliana (Ath) At4g21710 GI:15234572
Arabidopsis thaliana (Ath) AtCh015 GI:7525025
Caenorhabditis elegans (Cel) CE01162
(WBGene00016140)		 GI:17552304 Q10578
Drosophila melanogaster (Dme) 7299847
(FBgn0003276)		 GI:17136444
Homo sapiens (Hsa) Hs4505941
(POLR2B)		 GI:4505941 P30876
Saccharomyces cerevisiae (Sce) YOR151c
(S000005677)		 GI:6324725 P08518
Schizosaccharomyces pombe (Spo) SPAC23G3.01 GI:19114013 Q02061
Encephalitozoon cuniculi (Ecu) ECU10g0250 GI:19074634 Q8SR75
Arabidopsis thaliana (Ath) At3g18090 GI:15229585
Arabidopsis thaliana (Ath) At3g23780 GI:15229516
Arabidopsis thaliana (Ath) At4g21710 GI:15234572
Arabidopsis thaliana (Ath) AtCh015 GI:7525025
Caenorhabditis elegans (Cel) CE01162
(WBGene00016140)		 GI:17552304 Q10578
Drosophila melanogaster (Dme) 7299847
(FBgn0003276)		 GI:17136444
Homo sapiens (Hsa) Hs4505941
(POLR2B)		 GI:4505941 P30876
Saccharomyces cerevisiae (Sce) YOR151c
(S000005677)		 GI:6324725 P08518
Schizosaccharomyces pombe (Spo) SPAC23G3.01 GI:19114013 Q02061
Encephalitozoon cuniculi (Ecu) ECU10g0250 GI:19074634 Q8SR75
Arabidopsis thaliana (Ath) At3g18090 GI:15229585
Arabidopsis thaliana (Ath) At3g23780 GI:15229516
Arabidopsis thaliana (Ath) At4g21710 GI:15234572
Arabidopsis thaliana (Ath) AtCh015 GI:7525025
Caenorhabditis elegans (Cel) CE01162
(WBGene00016140)		 GI:17552304 Q10578
Drosophila melanogaster (Dme) 7299847
(FBgn0003276)		 GI:17136444
Homo sapiens (Hsa) Hs4505941
(POLR2B)		 GI:4505941 P30876
Saccharomyces cerevisiae (Sce) YOR151c
(S000005677)		 GI:6324725 P08518
Schizosaccharomyces pombe (Spo) SPAC23G3.01 GI:19114013 Q02061
Encephalitozoon cuniculi (Ecu) ECU10g0250 GI:19074634 Q8SR75


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex		 C
IPI
AthAt3g23780
GO:0000775 chromosome, centromeric region C
IDA
SpoSPAC23G3.01
GO:0000790 nuclear chromatin C
IC
SpoSPAC23G3.01
GO:0005634 nucleus C
IDA
AthAt3g23780
HsaPOLR2B
SpoSPAC23G3.01
GO:0005654 nucleoplasm C
EXP
HsaPOLR2B
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2B
SceS000005677
SpoSPAC23G3.01
IPI
AthAt4g21710
ISS
DmeFBgn0003276
NAS
DmeFBgn0003276
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005677
GO:0005720 nuclear heterochromatin C
IDA
AthAt3g23780
GO:0005739 mitochondrion C
IDA
SceS000005677
GO:0005829 cytosol C
IDA
SpoSPAC23G3.01
GO:0016020 membrane C
IDA
AthAt3g18090
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
ISS
AthAt4g21710
GO:0030880 RNA polymerase complex C
IPI
AthAt3g23780
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt3g23780
GO:0003677 DNA binding F
IDA
SpoSPAC23G3.01
ISS
AthAt3g23780
At3g18090
At4g21710
GO:0003702 RNA polymerase II transcription factor
activity		 F
RCA
SceS000005677
GO:0003723 RNA binding F
IDA
SpoSPAC23G3.01
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005677
IGI
SpoSPAC23G3.01
ISS
AthAt3g18090
At4g21710
At3g23780
DmeFBgn0003276
NAS
DmeFBgn0003276
GO:0004672 protein kinase activity F
IDA
HsaPOLR2B
GO:0005515 protein binding F
IPI
HsaPOLR2B
SpoSPAC23G3.01
GO:0000003 reproduction P
IMP
CelWBGene00016140
GO:0002119 nematode larval development P
IMP
CelWBGene00016140
GO:0006306 DNA methylation P
IDA
AthAt3g23780
IMP
AthAt3g23780
GO:0006350 transcription P
ISS
AthAt3g23780
At4g21710
At3g18090
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2B
IGI
SpoSPAC23G3.01
IMP
SceS000005677
ISS
DmeFBgn0003276
NAS
DmeFBgn0003276
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2B
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2B
GO:0006417 regulation of translation P
RCA
SceS000005677
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00016140
GO:0008380 RNA splicing P
EXP
HsaPOLR2B
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016140
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt4g21710
GO:0030422 production of siRNA involved in RNA
interference		 P
IGI
AthAt3g23780
IMP
AthAt3g23780
GO:0031047 gene silencing by RNA P
IMP
AthAt3g23780
GO:0031048 chromatin silencing by small RNA P
IMP
SpoSPAC23G3.01
GO:0035194 posttranscriptional gene silencing by
RNA		 P
IMP
AthAt3g23780
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016140

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
722

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR2B GI:4505941 P30876
Pan troglodytes (Ptr) POLR2B GI:114594586
Canis familiaris (Cfa) POLR2B GI:73975073
Mus musculus (Mmu) Polr2b
(MGI:2388280)		 GI:24418911 Q8CFI7
Rattus norvegicus (Rno) Polr2b GI:62660340
Gallus gallus (Gga) POLR2B GI:57530101
Drosophila melanogaster (Dme) RpII140
(FBgn0003276)		 GI:17136444
Anopheles gambiae (Aga) AgaP_AGAP003648 GI:158291888
Caenorhabditis elegans (Cel) rpb-2
(CE01162;
WBGene00016140)		 GI:17552304 Q10578
Schizosaccharomyces pombe (Spo) rpb2
(SPAC23G3.01)		 GI:63054498 Q02061
Saccharomyces cerevisiae (Sce) RPB2
(S000005677)		 GI:6324725 P08518
Kluyveromyces lactis (Kla) KLLA0B05577g GI:50303683
Eremothecium gossypii (Ego) AGOS_AFR404C GI:45198922
Magnaporthe grisea (Mgr) MGG_04714 GI:39945464
Neurospora crassa (Ncr) NCU05120.1 GI:32407978
Arabidopsis thaliana (Ath) NRPB2 GI:15234572
Oryza sativa (Osa) Os03g0646800 GI:115454339
Plasmodium falciparum (Pfa) PFB0715w GI:124801317


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000775 chromosome, centromeric region C
IDA
SpoSPAC23G3.01
GO:0000790 nuclear chromatin C
IC
SpoSPAC23G3.01
GO:0005575 cellular_component C
ND
MmuMGI:2388280
GO:0005634 nucleus C
IDA
HsaPOLR2B
SpoSPAC23G3.01
GO:0005654 nucleoplasm C
EXP
HsaPOLR2B
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
HsaPOLR2B
SceS000005677
SpoSPAC23G3.01
IPI
AthNRPB2
ISS
DmeFBgn0003276
PfaPFB0715w
NAS
DmeFBgn0003276
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005677
GO:0005739 mitochondrion C
IDA
SceS000005677
GO:0005829 cytosol C
IDA
SpoSPAC23G3.01
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
ISS
AthNRPB2
GO:0003674 molecular_function F
ND
MmuMGI:2388280
GO:0003677 DNA binding F
IDA
SpoSPAC23G3.01
ISS
AthNRPB2
GO:0003702 RNA polymerase II transcription factor
activity		 F
RCA
SceS000005677
GO:0003723 RNA binding F
IDA
SpoSPAC23G3.01
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005677
IGI
SpoSPAC23G3.01
ISS
AthNRPB2
DmeFBgn0003276
NAS
DmeFBgn0003276
GO:0004672 protein kinase activity F
IDA
HsaPOLR2B
GO:0005515 protein binding F
IPI
HsaPOLR2B
SpoSPAC23G3.01
GO:0000003 reproduction P
IMP
CelWBGene00016140
GO:0002119 nematode larval development P
IMP
CelWBGene00016140
GO:0006350 transcription P
ISS
AthNRPB2
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
HsaPOLR2B
IGI
SpoSPAC23G3.01
IMP
SceS000005677
ISS
DmeFBgn0003276
PfaPFB0715w
NAS
DmeFBgn0003276
GO:0006367 transcription initiation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2B
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
EXP
HsaPOLR2B
GO:0006417 regulation of translation P
RCA
SceS000005677
GO:0008150 biological_process P
ND
MmuMGI:2388280
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00016140
GO:0008380 RNA splicing P
EXP
HsaPOLR2B
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016140
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthNRPB2
GO:0031048 chromatin silencing by small RNA P
IMP
SpoSPAC23G3.01
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016140

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_406

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga6107 ENSANGP00000011389
Ashbya gossypii (Ago) ago3596 AFR404C
Arabidopsis thaliana (Ath) ath20088 At4g21710.1
Caenorhabditis elegans (Cel) cel2773 C26E6.4
(CE01162;
WBGene00016140)
Candida glabrata (Cgl) cgl4263 CAGL0L04246g
Cryptococcus neoformans (Cne) cne563 163.m06420
Dictyostelium discoideum (Ddi) ddi13129 DDB0216277
Drosophila melanogaster (Dme) dme12537 CG3180-PA
(FBgn0003276)
Danio rerio (Dre) dre5976 ENSDARP00000010611
Danio rerio (Dre) dre5977 ENSDARP00000036755
Danio rerio (Dre) dre5973 ENSDARP00000041407
(polr2b)		 Q504C7
Danio rerio (Dre) dre5974 ENSDARP00000042881
Danio rerio (Dre) dre5975 ENSDARP00000049732
Escherichia coli (Eco) eco3835 16131817
Encephalitozoon cuniculi (Ecu) ecu550 19074634
Takifugu rubripes (Fru) fru21554 SINFRUP00000151234
Gallus gallus (Gga) gga17697 ENSGALP00000018549
(POLR2B)
Gallus gallus (Gga) gga17698 ENSGALP00000018550
Homo sapiens (Hsa) hsa24134 ENSP00000312735
(POLR2B)		 P30876
Kluyveromyces lactis (Kla) kla782 KLLA0B05577g
Mus musculus (Mmu) mmu20267 ENSMUSP00000031167
(MGI:2388280)		 Q8CFI7
Neurospora crassa (Ncr) ncr4972 NCU05120.2
Oryza sativa (Osa) osa18315 3179.m00091
Oryza sativa (Osa) osa27487 4175.m00055
Oryza sativa (Osa) osa37701 5025.m00144
Oryza sativa (Osa) osa44764 5355.m00112
Oryza sativa (Osa) osa48236 5811.m00104
Oryza sativa (Osa) osa52699 5942.m00048
Oryza sativa (Osa) osa60146 6409.m00154
Oryza sativa (Osa) osa73110 7106.m00116
Plasmodium falciparum (Pfa) pfa98 PFB0715w
Rattus norvegicus (Rno) rno10257 ENSRNOP00000030781
(RGD:1309477)
Saccharomyces cerevisiae (Sce) sce5890 YOR151C
(S000005677)
Schizosaccharomyces pombe (Spo) spo2401 SPAC23G3.01 Q02061
Yarrowia lipolytica (Yli) yli2860 YALI0D03718g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000775 chromosome, centromeric region C
IDA
SpoSPAC23G3.01
GO:0000790 nuclear chromatin C
IC
SpoSPAC23G3.01
GO:0005575 cellular_component C
ND
MmuMGI:2388280
GO:0005634 nucleus C
IDA
SpoSPAC23G3.01
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000005677
SpoSPAC23G3.01
IPI
AthAt4g21710
ISS
DmeFBgn0003276
PfaPFB0715w
NAS
DmeFBgn0003276
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005677
GO:0005739 mitochondrion C
IDA
SceS000005677
GO:0005829 cytosol C
IDA
SpoSPAC23G3.01
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme		 C
ISS
AthAt4g21710
GO:0003674 molecular_function F
ND
MmuMGI:2388280
GO:0003677 DNA binding F
IDA
SpoSPAC23G3.01
ISS
AthAt4g21710
GO:0003702 RNA polymerase II transcription factor
activity		 F
RCA
SceS000005677
GO:0003723 RNA binding F
IDA
SpoSPAC23G3.01
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005677
IGI
SpoSPAC23G3.01
ISS
AthAt4g21710
DmeFBgn0003276
NAS
DmeFBgn0003276
GO:0005515 protein binding F
IPI
SpoSPAC23G3.01
GO:0000003 reproduction P
IMP
CelWBGene00016140
GO:0002119 nematode larval development P
IMP
CelWBGene00016140
GO:0006350 transcription P
ISS
AthAt4g21710
GO:0006366 transcription from RNA polymerase II
promoter		 P
IGI
SpoSPAC23G3.01
IMP
SceS000005677
ISS
DmeFBgn0003276
PfaPFB0715w
NAS
DmeFBgn0003276
GO:0006417 regulation of translation P
RCA
SceS000005677
GO:0008150 biological_process P
ND
MmuMGI:2388280
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00016140
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00016140
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt4g21710
GO:0031048 chromatin silencing by small RNA P
IMP
SpoSPAC23G3.01
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00016140

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC23G3.01
(Q02061)		 YOR151C
(S000005677)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000775 chromosome, centromeric region C
IDA
SpoSPAC23G3.01
GO:0000790 nuclear chromatin C
IC
SpoSPAC23G3.01
GO:0005634 nucleus C
IDA
SpoSPAC23G3.01
GO:0005665 DNA-directed RNA polymerase II, core
complex		 C
IDA
SceS000005677
SpoSPAC23G3.01
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005677
GO:0005739 mitochondrion C
IDA
SceS000005677
GO:0005829 cytosol C
IDA
SpoSPAC23G3.01
GO:0003677 DNA binding F
IDA
SpoSPAC23G3.01
GO:0003702 RNA polymerase II transcription factor
activity		 F
RCA
SceS000005677
GO:0003723 RNA binding F
IDA
SpoSPAC23G3.01
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005677
IGI
SpoSPAC23G3.01
GO:0005515 protein binding F
IPI
SpoSPAC23G3.01
GO:0006366 transcription from RNA polymerase II
promoter		 P
IGI
SpoSPAC23G3.01
IMP
SceS000005677
GO:0006417 regulation of translation P
RCA
SceS000005677
GO:0031048 chromatin silencing by small RNA P
IMP
SpoSPAC23G3.01

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