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Search term: YOR159C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SME1
SGD link S000005685
Alternative ID YOR159C
Description Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E
Synonyms YOR159C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1774 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein E

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g18740 GI:15224217
Arabidopsis thaliana (Ath) At4g30330 GI:7269933
Caenorhabditis elegans (Cel) CE22230
(WBGene00004919)		 GI:17556060 Q9XTU6
Drosophila melanogaster (Dme) 7297315 GI:7297315
Homo sapiens (Hsa) Hs14741936 GI:14741936
Homo sapiens (Hsa) Hs14765206 GI:14765206
Homo sapiens (Hsa) Hs4507129
(SNRPE)		 GI:4507129 P62304
Saccharomyces cerevisiae (Sce) YOR159c
(S000005685)		 GI:6324733 Q12330
Schizosaccharomyces pombe (Spo) SPBC11G11.06c GI:19112516 Q9USZ3
Encephalitozoon cuniculi (Ecu) ECU02g1020 GI:19074021 Q8SSF1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC11G11.06c
ISS
AthAt4g30330
At2g18740
GO:0005654 nucleoplasm C
EXP
HsaSNRPE
GO:0005681 spliceosomal complex C
NAS
HsaSNRPE
GO:0005682 U5 snRNP C
IDA
SceS000005685
GO:0005683 U7 snRNP C
IDA
HsaSNRPE
GO:0005685 U1 snRNP C
IDA
SceS000005685
SpoSPBC11G11.06c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g30330
At2g18740
GO:0005829 cytosol C
EXP
HsaSNRPE
IDA
SpoSPBC11G11.06c
GO:0030532 small nuclear ribonucleoprotein
complex		 C
NAS
HsaSNRPE
GO:0043186 P granule C
IDA
CelWBGene00004919
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0071004 U2-type prespliceosome C
IDA
SceS000005685
GO:0003674 molecular_function F
ND
AthAt4g30330
At2g18740
SceS000005685
GO:0003723 RNA binding F
RCA
SceS000005685
GO:0005515 protein binding F
IPI
HsaSNRPE
GO:0000003 reproduction P
IMP
CelWBGene00004919
GO:0000245 spliceosome assembly P
NAS
HsaSNRPE
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPE
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC11G11.06c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0002119 nematode larval development P
IMP
CelWBGene00004919
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005685
GO:0006997 nucleus organization P
IMP
CelWBGene00004919
GO:0008150 biological_process P
ND
AthAt2g18740
GO:0008380 RNA splicing P
EXP
HsaSNRPE
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004919
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004919
GO:0032940 secretion by cell P
IMP
CelWBGene00004919
GO:0040007 growth P
IMP
CelWBGene00004919
GO:0040011 locomotion P
IMP
CelWBGene00004919
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004919

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
37729

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) LOC100130109 GI:169213483
Pan troglodytes (Ptr) SNRPEL1 GI:55632867
Canis familiaris (Cfa) SNRPE GI:74005840
Mus musculus (Mmu) Snrpe
(MGI:98346)		 GI:27883844 P62305
Rattus norvegicus (Rno) Snrpe GI:109484106
Gallus gallus (Gga) SNRPE GI:45382605
Drosophila melanogaster (Dme) CG18591
(FBgn0031962)		 GI:24582631
Anopheles gambiae (Aga) AgaP_AGAP010440 GI:118781504
Caenorhabditis elegans (Cel) snr-6
(CE22230;
WBGene00004919)		 GI:17556060 Q9XTU6
Schizosaccharomyces pombe (Spo) sme1
(SPBC11G11.06c)		 GI:19112516 Q9USZ3
Saccharomyces cerevisiae (Sce) SME1
(S000005685)		 GI:6324733 Q12330
Kluyveromyces lactis (Kla) KLLA0A02299g GI:50302335
Eremothecium gossypii (Ego) AGOS_AAR116W GI:45184940
Magnaporthe grisea (Mgr) MGG_01450 GI:145613670
Neurospora crassa (Ncr) NCU06354.1 GI:32411457
Arabidopsis thaliana (Ath) AT4G30330 GI:18417572
Arabidopsis thaliana (Ath) AT2G18740 GI:15224217
Oryza sativa (Osa) Os02g0126700 GI:115443949
Plasmodium falciparum (Pfa) MAL13P1.253 GI:124513718


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC11G11.06c
ISS
AthAt4g30330
At2g18740
GO:0005682 U5 snRNP C
IDA
SceS000005685
GO:0005685 U1 snRNP C
IDA
SceS000005685
SpoSPBC11G11.06c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g30330
At2g18740
PfaMAL13P1.253
GO:0005829 cytosol C
IDA
SpoSPBC11G11.06c
GO:0043186 P granule C
IDA
CelWBGene00004919
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0071004 U2-type prespliceosome C
IDA
SceS000005685
GO:0003674 molecular_function F
ND
AthAt4g30330
At2g18740
SceS000005685
GO:0003723 RNA binding F
RCA
SceS000005685
GO:0000003 reproduction P
IMP
CelWBGene00004919
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC11G11.06c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0002119 nematode larval development P
IMP
CelWBGene00004919
GO:0006396 RNA processing P
ISS
PfaMAL13P1.253
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005685
GO:0006997 nucleus organization P
IMP
CelWBGene00004919
GO:0008150 biological_process P
ND
AthAt2g18740
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004919
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004919
GO:0032940 secretion by cell P
IMP
CelWBGene00004919
GO:0040007 growth P
IMP
CelWBGene00004919
GO:0040011 locomotion P
IMP
CelWBGene00004919
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004919

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2012

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga7317 ENSANGP00000022836
Ashbya gossypii (Ago) ago303 AAR116W
Arabidopsis thaliana (Ath) ath8730 At2g18740.1
Arabidopsis thaliana (Ath) ath21086 At4g30330.1
Caenorhabditis elegans (Cel) cel19347 Y49E10.15
(CE22230;
WBGene00004919)
Cryptococcus neoformans (Cne) cne291 162.m02822
Debaryomyces hansenii (Dha) dha5958 DEHA0G05830g
Drosophila melanogaster (Dme) dme1321 CG18591-PA
(FBgn0031962)
Danio rerio (Dre) dre28827 ENSDARP00000050295
(zgc:56682)		 Q7ZUG0
Encephalitozoon cuniculi (Ecu) ecu100 19074021
Takifugu rubripes (Fru) fru13457 SINFRUP00000129688
Takifugu rubripes (Fru) fru13456 SINFRUP00000170913
Takifugu rubripes (Fru) fru13455 SINFRUP00000174032
Gallus gallus (Gga) gga24480 ENSGALP00000000189
(SNRPE)		 P62303
Homo sapiens (Hsa) hsa31012 ENSP00000327930
Homo sapiens (Hsa) hsa15404 ENSP00000329276
Kluyveromyces lactis (Kla) kla99 KLLA0A02299g
Neurospora crassa (Ncr) ncr6173 NCU06354.2
Oryza sativa (Osa) osa38260 4889.m00139
Oryza sativa (Osa) osa71529 7198.m00137
Plasmodium falciparum (Pfa) pfa3999 MAL13P1.253
Rattus norvegicus (Rno) rno2155 ENSRNOP00000042416
Rattus norvegicus (Rno) rno32288 ENSRNOP00000045609
(RGD:1305249)
Rattus norvegicus (Rno) rno29475 ENSRNOP00000047775
(GI:685587)
Saccharomyces cerevisiae (Sce) sce5898 YOR159C
(S000005685)
Schizosaccharomyces pombe (Spo) spo1770 SPBC11G11.06c Q9USZ3
Yarrowia lipolytica (Yli) yli2755 YALI0D01155g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC11G11.06c
ISS
AthAt4g30330
At2g18740
GO:0005682 U5 snRNP C
IDA
SceS000005685
GO:0005685 U1 snRNP C
IDA
SceS000005685
SpoSPBC11G11.06c
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g30330
At2g18740
PfaMAL13P1.253
GO:0005829 cytosol C
IDA
SpoSPBC11G11.06c
GO:0043186 P granule C
IDA
CelWBGene00004919
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0071004 U2-type prespliceosome C
IDA
SceS000005685
GO:0003674 molecular_function F
ND
AthAt4g30330
At2g18740
SceS000005685
GO:0003723 RNA binding F
RCA
SceS000005685
GO:0000003 reproduction P
IMP
CelWBGene00004919
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC11G11.06c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0002119 nematode larval development P
IMP
CelWBGene00004919
GO:0006396 RNA processing P
ISS
PfaMAL13P1.253
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005685
GO:0006997 nucleus organization P
IMP
CelWBGene00004919
GO:0008150 biological_process P
ND
AthAt2g18740
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004919
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004919
GO:0032940 secretion by cell P
IMP
CelWBGene00004919
GO:0040007 growth P
IMP
CelWBGene00004919
GO:0040011 locomotion P
IMP
CelWBGene00004919
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004919

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC11G11.06c
(Q9USZ3)		 YOR159C
(S000005685)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC11G11.06c
GO:0005682 U5 snRNP C
IDA
SceS000005685
GO:0005685 U1 snRNP C
IDA
SceS000005685
SpoSPBC11G11.06c
GO:0005829 cytosol C
IDA
SpoSPBC11G11.06c
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0071004 U2-type prespliceosome C
IDA
SceS000005685
GO:0003674 molecular_function F
ND
SceS000005685
GO:0003723 RNA binding F
RCA
SceS000005685
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC11G11.06c
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000005685
ISS
SpoSPBC11G11.06c
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005685

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Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

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