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Search term: YOR166C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SWT1
SGD link S000005692
Alternative ID YOR166C
Description RNA endoribonuclease involved in perinuclear mRNP quality control via the turnover of aberrant, unprocessed pre-mRNAs; interacts with subunits of THO/TREX, TREX-2, and RNA polymerase II; contains a PIN (PilT N terminus) domain
Synonyms YOR166C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4689 ---HYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Predicted RNase

Species KOG link NCBI link UniProt link
Homo sapiens (Hsa) Hs19923504 GI:19923504
Saccharomyces cerevisiae (Sce) YOR166c
(S000005692)		 GI:6324740 Q12104
Schizosaccharomyces pombe (Spo) SPCC24B10.15 GI:19075518 Q9P7J1


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005692
SpoSPCC24B10.15
GO:0005737 cytoplasm C
IDA
SceS000005692
GO:0005829 cytosol C
IDA
SpoSPCC24B10.15
GO:0000166 nucleotide binding F
ISS
SpoSPCC24B10.15
GO:0004521 endoribonuclease activity F
IDA
SceS000005692
IMP
SceS000005692
ISS
SpoSPCC24B10.15
GO:0006351 transcription, DNA-dependent P
IGI
SceS000005692
IMP
SceS000005692
IPI
SceS000005692
ISS
SpoSPCC24B10.15
GO:0071032 nuclear mRNA surveillance of mRNP
export		 P
IMP
SceS000005692
ISS
SpoSPCC24B10.15

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40292

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SWT1
(S000005692)		 GI:6324740 Q12104
Kluyveromyces lactis (Kla) KLLA0F20361g GI:50311925


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005692
GO:0005737 cytoplasm C
IDA
SceS000005692
GO:0004521 endoribonuclease activity F
IDA
SceS000005692
IMP
SceS000005692
GO:0006351 transcription, DNA-dependent P
IGI
SceS000005692
IMP
SceS000005692
IPI
SceS000005692
GO:0071032 nuclear mRNA surveillance of mRNP
export		 P
IMP
SceS000005692

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_5598

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago4573 AGR262W
Candida glabrata (Cgl) cgl4274 CAGL0L04488g
Cryptococcus neoformans (Cne) cne2034 181.m08017
Debaryomyces hansenii (Dha) dha5476 DEHA0F24398g
Drosophila melanogaster (Dme) dme18429 CG7206-PA
(FBgn0030892)
Drosophila melanogaster (Dme) dme18430 CG7206-PB
(FBgn0030892)
Danio rerio (Dre) dre12860 ENSDARP00000050105
Gallus gallus (Gga) gga24128 ENSGALP00000008178
Gallus gallus (Gga) gga24129 ENSGALP00000008205
(C1orf26)
Homo sapiens (Hsa) hsa2747 ENSP00000264138
Kluyveromyces lactis (Kla) kla4994 KLLA0F20361g
Mus musculus (Mmu) mmu1215 ENSMUSP00000067516
(MGI:1914125)		 Q9DBQ9-1
Rattus norvegicus (Rno) rno9245 ENSRNOP00000042336
Rattus norvegicus (Rno) rno9244 ENSRNOP00000047670
Rattus norvegicus (Rno) rno9243 ENSRNOP00000049813
(RGD:1308695)
Saccharomyces cerevisiae (Sce) sce5908 YOR166C
(S000005692)
Schizosaccharomyces pombe (Spo) spo3889 SPCC24B10.15 Q9P7J1
Yarrowia lipolytica (Yli) yli2715 YALI0D00253g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1914125
GO:0005634 nucleus C
IDA
SceS000005692
SpoSPCC24B10.15
GO:0005737 cytoplasm C
IDA
SceS000005692
GO:0005829 cytosol C
IDA
SpoSPCC24B10.15
GO:0000166 nucleotide binding F
ISS
SpoSPCC24B10.15
GO:0003674 molecular_function F
ND
MmuMGI:1914125
GO:0004521 endoribonuclease activity F
IDA
SceS000005692
IMP
SceS000005692
ISS
SpoSPCC24B10.15
GO:0006351 transcription, DNA-dependent P
IGI
SceS000005692
IMP
SceS000005692
IPI
SceS000005692
ISS
SpoSPCC24B10.15
GO:0008150 biological_process P
ND
MmuMGI:1914125
GO:0071032 nuclear mRNA surveillance of mRNP
export		 P
IMP
SceS000005692
ISS
SpoSPCC24B10.15

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC24B10.15
(Q9P7J1)		 YOR166C
(S000005692)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000005692
SpoSPCC24B10.15
GO:0005737 cytoplasm C
IDA
SceS000005692
GO:0005829 cytosol C
IDA
SpoSPCC24B10.15
GO:0000166 nucleotide binding F
ISS
SpoSPCC24B10.15
GO:0004521 endoribonuclease activity F
IDA
SceS000005692
IMP
SceS000005692
ISS
SpoSPCC24B10.15
GO:0006351 transcription, DNA-dependent P
IGI
SceS000005692
IMP
SceS000005692
IPI
SceS000005692
ISS
SpoSPCC24B10.15
GO:0071032 nuclear mRNA surveillance of mRNP
export		 P
IMP
SceS000005692
ISS
SpoSPCC24B10.15

Back to the top
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