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Search term: YOR207C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RET1
SGD link S000005733
Alternative ID YOR207C
Description Second-largest subunit of RNA polymerase III, which is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs
Synonyms YOR207C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0215 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase III, second largest subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g45140 GI:15242328
Caenorhabditis elegans (Cel) CE00690 GI:17552960
Drosophila melanogaster (Dme) 7303535
(FBgn0004463)		 GI:17647877
Homo sapiens (Hsa) Hs22058718 GI:22058718
Homo sapiens (Hsa) Hs8922399 GI:8922399
Saccharomyces cerevisiae (Sce) YOR207c
(S000005733)		 GI:6324781 P22276
Schizosaccharomyces pombe (Spo) SPAC4G9.08c GI:19114602 Q10233
Encephalitozoon cuniculi (Ecu) ECU11g0370 GI:19074837 Q8SQY8
Arabidopsis thaliana (Ath) At5g45140 GI:15242328
Caenorhabditis elegans (Cel) CE00690 GI:17552960
Drosophila melanogaster (Dme) 7303535
(FBgn0004463)		 GI:17647877
Homo sapiens (Hsa) Hs22058718 GI:22058718
Homo sapiens (Hsa) Hs8922399 GI:8922399
Saccharomyces cerevisiae (Sce) YOR207c
(S000005733)		 GI:6324781 P22276
Schizosaccharomyces pombe (Spo) SPAC4G9.08c GI:19114602 Q10233
Encephalitozoon cuniculi (Ecu) ECU11g0370 GI:19074837 Q8SQY8
Arabidopsis thaliana (Ath) At5g45140 GI:15242328
Caenorhabditis elegans (Cel) CE00690 GI:17552960
Drosophila melanogaster (Dme) 7303535
(FBgn0004463)		 GI:17647877
Homo sapiens (Hsa) Hs22058718 GI:22058718
Homo sapiens (Hsa) Hs8922399 GI:8922399
Saccharomyces cerevisiae (Sce) YOR207c
(S000005733)		 GI:6324781 P22276
Schizosaccharomyces pombe (Spo) SPAC4G9.08c GI:19114602 Q10233
Encephalitozoon cuniculi (Ecu) ECU11g0370 GI:19074837 Q8SQY8


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g45140
GO:0005634 nucleus C
NAS
DmeFBgn0004463
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000005733
ISS
DmeFBgn0004463
NAS
SpoSPAC4G9.08c
GO:0005829 cytosol C
IDA
SpoSPAC4G9.08c
GO:0003677 DNA binding F
ISS
AthAt5g45140
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005733
ISS
AthAt5g45140
DmeFBgn0004463
NAS
SpoSPAC4G9.08c
GO:0006350 transcription P
ISS
AthAt5g45140
GO:0006383 transcription from RNA polymerase III
promoter		 P
ISS
DmeFBgn0004463
NAS
DmeFBgn0004463
SpoSPAC4G9.08c
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005733
IGI
SceS000005733

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
6981

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR3B GI:42476127
Pan troglodytes (Ptr) POLR3B GI:114646699
Canis familiaris (Cfa) POLR3B GI:73969955
Mus musculus (Mmu) Polr3b
(MGI:1917678)		 GI:46195739 P59470
Rattus norvegicus (Rno) Polr3b GI:109480396
Gallus gallus (Gga) POLR3B GI:118082917
Drosophila melanogaster (Dme) RpIII128
(FBgn0004463)		 GI:17647877
Anopheles gambiae (Aga) AgaP_AGAP008151 GI:158297007
Caenorhabditis elegans (Cel) F09F7.3
(CE30653;
WBGene00017300)		 GI:25144348
Schizosaccharomyces pombe (Spo) rpc2
(SPAC4G9.08c)		 GI:19114602 Q10233
Saccharomyces cerevisiae (Sce) RET1
(S000005733)		 GI:6324781 P22276
Kluyveromyces lactis (Kla) KLLA0F01078g GI:50310217
Eremothecium gossypii (Ego) AGOS_ADL275C GI:45187598
Magnaporthe grisea (Mgr) MGG_06984 GI:39978199
Neurospora crassa (Ncr) NCU01772.1 GI:32415463
Arabidopsis thaliana (Ath) NRPC2 GI:79529842
Oryza sativa (Osa) Os03g0403100 GI:115453445
Plasmodium falciparum (Pfa) PFL0330c GI:124805562


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthNRPC2
MmuMGI:1917678
GO:0005634 nucleus C
NAS
DmeFBgn0004463
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000005733
ISS
DmeFBgn0004463
PfaPFL0330c
NAS
SpoSPAC4G9.08c
GO:0005829 cytosol C
IDA
SpoSPAC4G9.08c
GO:0003674 molecular_function F
ND
MmuMGI:1917678
GO:0003677 DNA binding F
ISS
AthNRPC2
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005733
ISS
AthNRPC2
DmeFBgn0004463
NAS
SpoSPAC4G9.08c
GO:0000003 reproduction P
IMP
CelWBGene00017300
GO:0002119 nematode larval development P
IMP
CelWBGene00017300
GO:0006350 transcription P
ISS
AthNRPC2
GO:0006383 transcription from RNA polymerase III
promoter		 P
ISS
DmeFBgn0004463
PfaPFL0330c
NAS
DmeFBgn0004463
SpoSPAC4G9.08c
GO:0008150 biological_process P
ND
MmuMGI:1917678
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017300
GO:0032728 positive regulation of interferon-beta
production		 P
IMP
HsaPOLR3B
GO:0040007 growth P
IMP
CelWBGene00017300
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00017300
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005733
IGI
SceS000005733
GO:0045089 positive regulation of innate immune
response		 P
IMP
HsaPOLR3B

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1070

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga10131 ENSANGP00000006850
Ashbya gossypii (Ago) ago1466 ADL275C
Arabidopsis thaliana (Ath) ath26358 At5g45140.1
Caenorhabditis elegans (Cel) cel5819 F09F7.3
(CE30653;
WBGene00017300)
Candida glabrata (Cgl) cgl4199 CAGL0L02849g
Cryptococcus neoformans (Cne) cne164 162.m02622
Dictyostelium discoideum (Ddi) ddi12854 DDB0216313
Debaryomyces hansenii (Dha) dha6792 DEHA0G24574g
Drosophila melanogaster (Dme) dme4591 CG8344-PA
(FBgn0004463)
Danio rerio (Dre) dre8810 ENSDARP00000008983
Danio rerio (Dre) dre8872 ENSDARP00000029599
Danio rerio (Dre) dre8871 ENSDARP00000045930
Danio rerio (Dre) dre8811 ENSDARP00000046462
Danio rerio (Dre) dre8870 ENSDARP00000050489
Encephalitozoon cuniculi (Ecu) ecu925 19074837
Takifugu rubripes (Fru) fru3870 SINFRUP00000164767
Takifugu rubripes (Fru) fru3869 SINFRUP00000170237
Gallus gallus (Gga) gga1011 ENSGALP00000020620
(POLR3B)
Gallus gallus (Gga) gga1012 ENSGALP00000020621
Gallus gallus (Gga) gga1013 ENSGALP00000020622
Gallus gallus (Gga) gga1014 ENSGALP00000020623
Gallus gallus (Gga) gga1015 ENSGALP00000020624
Gallus gallus (Gga) gga1018 ENSGALP00000020625
Gallus gallus (Gga) gga1016 ENSGALP00000020626
Gallus gallus (Gga) gga1017 ENSGALP00000020627
Gallus gallus (Gga) gga1019 ENSGALP00000020628
Homo sapiens (Hsa) hsa8107 ENSP00000228347
(POLR3B)		 Q9NW08
Kluyveromyces lactis (Kla) kla4127 KLLA0F01078g
Mus musculus (Mmu) mmu2644 ENSMUSP00000076418
(MGI:1917678)		 P59470
Mus musculus (Mmu) mmu2645 ENSMUSP00000080560
Neurospora crassa (Ncr) ncr1724 NCU01772.2
Oryza sativa (Osa) osa64626 6712.m00157
Oryza sativa (Osa) osa64652 6712.m00181
Plasmodium falciparum (Pfa) pfa4852 PFL0330c
Rattus norvegicus (Rno) rno26539 ENSRNOP00000009746
(RGD:1565311)
Saccharomyces cerevisiae (Sce) sce5953 YOR207C
(S000005733)
Schizosaccharomyces pombe (Spo) spo1051 SPAC4G9.08c Q10233
Yarrowia lipolytica (Yli) yli1421 YALI0B16258g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt5g45140
MmuMGI:1917678
GO:0005634 nucleus C
NAS
DmeFBgn0004463
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000005733
ISS
DmeFBgn0004463
PfaPFL0330c
NAS
SpoSPAC4G9.08c
GO:0005829 cytosol C
IDA
SpoSPAC4G9.08c
GO:0003674 molecular_function F
ND
MmuMGI:1917678
GO:0003677 DNA binding F
ISS
AthAt5g45140
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005733
ISS
AthAt5g45140
DmeFBgn0004463
NAS
SpoSPAC4G9.08c
GO:0000003 reproduction P
IMP
CelWBGene00017300
GO:0002119 nematode larval development P
IMP
CelWBGene00017300
GO:0006350 transcription P
ISS
AthAt5g45140
GO:0006383 transcription from RNA polymerase III
promoter		 P
ISS
DmeFBgn0004463
PfaPFL0330c
NAS
DmeFBgn0004463
SpoSPAC4G9.08c
GO:0008150 biological_process P
ND
MmuMGI:1917678
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017300
GO:0040007 growth P
IMP
CelWBGene00017300
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00017300
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005733
IGI
SceS000005733

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC4G9.08c
(Q10233)		 YOR207C
(S000005733)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005666 DNA-directed RNA polymerase III
complex		 C
IDA
SceS000005733
NAS
SpoSPAC4G9.08c
GO:0005829 cytosol C
IDA
SpoSPAC4G9.08c
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005733
NAS
SpoSPAC4G9.08c
GO:0006383 transcription from RNA polymerase III
promoter		 P
NAS
SpoSPAC4G9.08c
GO:0042797 tRNA transcription from RNA polymerase III
promoter		 P
IDA
SceS000005733
IGI
SceS000005733

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GO info in one table:

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