YOGY Home YOGY Help

Search term: YOR250C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CLP1
SGD link S000005776
Alternative ID YOR250C
Description Subunit of cleavage factor I (CFI), involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3'-end maturation
Synonyms YOR250C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2749 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g04680 GI:15229328
Arabidopsis thaliana (Ath) At5g39930 GI:15242523
Caenorhabditis elegans (Cel) CE17941
(WBGene00010304)
GI:17553760
Drosophila melanogaster (Dme) 7303312
(FBgn0033842)
GI:19922174
Homo sapiens (Hsa) Hs5803029
(CLP1)
GI:5803029 Q92989
Saccharomyces cerevisiae (Sce) YOR250c
(S000005776)
GI:6324824 Q08685
Schizosaccharomyces pombe (Spo) SPAC22H10.05c GI:19114653 Q10299
Encephalitozoon cuniculi (Ecu) ECU05g1130 GI:19173653 Q8SVI2


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
HsaCLP1
GO:0005634 nucleus C
IDA
AthAt3g04680
SpoSPAC22H10.05c
GO:0005829 cytosol C
IDA
SpoSPAC22H10.05c
GO:0005849 mRNA cleavage factor complex C
IPI
AthAt3g04680
SceS000005776
ISS
AthAt3g04680
SpoSPAC22H10.05c
GO:0003674 molecular_function F
ND
DmeFBgn0033842
GO:0003723 RNA binding F
IDA
SceS000005776
GO:0005488 binding F
ISS
AthAt3g04680
GO:0005524 ATP binding F
TAS
HsaCLP1
GO:0051733 polydeoxyribonucleotide kinase
activity
F
IDA
HsaCLP1
GO:0051736 ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity
F
IDA
HsaCLP1
GO:0000003 reproduction P
IMP
CelWBGene00010304
GO:0002119 nematode larval development P
IMP
CelWBGene00010304
GO:0006378 mRNA polyadenylation P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0006379 mRNA cleavage P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0006388 tRNA splicing, via endonucleolytic cleavage and
ligation
P
IDA
HsaCLP1
GO:0006397 mRNA processing P
IMP
AthAt3g04680
GO:0008380 RNA splicing P
EXP
HsaCLP1
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00010304
GO:0009908 flower development P
IMP
AthAt3g04680
GO:0010228 vegetative to reproductive phase transition of
meristem
P
IMP
AthAt3g04680
GO:0030423 targeting of mRNA for destruction involved in RNA
interference
P
IMP
HsaCLP1
GO:0031123 RNA 3'-end processing P
RCA
SceS000005776
GO:0031124 mRNA 3'-end processing P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
TAS
HsaCLP1
GO:0035087 siRNA loading onto RISC involved in RNA
interference
P
IDA
HsaCLP1
GO:0040007 growth P
IMP
CelWBGene00010304
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010304
GO:0040015 negative regulation of multicellular organism
growth
P
IMP
CelWBGene00010304
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00010304
GO:0048827 phyllome development P
IMP
AthAt3g04680

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
101646

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC22H10.05c GI:19114653 Q10299
Saccharomyces cerevisiae (Sce) CLP1
(S000005776)
GI:6324824 Q08685
Kluyveromyces lactis (Kla) KLLA0C09988g GI:50305369
Eremothecium gossypii (Ego) AGOS_AAL095W GI:45184729
Magnaporthe grisea (Mgr) MGG_08804 GI:145601355
Neurospora crassa (Ncr) NCU06314.1 GI:32411377


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22H10.05c
GO:0005829 cytosol C
IDA
SpoSPAC22H10.05c
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0003723 RNA binding F
IDA
SceS000005776
GO:0006378 mRNA polyadenylation P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0006379 mRNA cleavage P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0031123 RNA 3'-end processing P
RCA
SceS000005776
GO:0031124 mRNA 3'-end processing P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1731

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3132 ENSANGP00000020766
Ashbya gossypii (Ago) ago92 AAL095W
Arabidopsis thaliana (Ath) ath12510 At3g04680.1
Arabidopsis thaliana (Ath) ath12511 At3g04680.2
Arabidopsis thaliana (Ath) ath25765 At5g39930.1
Caenorhabditis elegans (Cel) cel11005 F59A2.4
(CE17941;
WBGene00010304)
Candida glabrata (Cgl) cgl3913 CAGL0K09086g
Cryptococcus neoformans (Cne) cne3219 167.m03566
Dictyostelium discoideum (Ddi) ddi8701 DDB0186537
Debaryomyces hansenii (Dha) dha2026 DEHA0C13519g
Drosophila melanogaster (Dme) dme4910 CG5970-PA
(FBgn0033842)
Danio rerio (Dre) dre25182 ENSDARP00000011879
Encephalitozoon cuniculi (Ecu) ecu1215 19173653
Takifugu rubripes (Fru) fru6804 SINFRUP00000143850
Gallus gallus (Gga) gga19007 ENSGALP00000011907
(CLP1)
Q5ZJL4
Homo sapiens (Hsa) hsa5634 ENSP00000304704
(CLP1)
Q92989
Kluyveromyces lactis (Kla) kla1643 KLLA0C09988g
Mus musculus (Mmu) mmu14896 ENSMUSP00000028475
(MGI:2138968)
Q99LI9
Neurospora crassa (Ncr) ncr6137 NCU06314.2
Oryza sativa (Osa) osa29396 4325.m00142
Oryza sativa (Osa) osa59975 6370.m00137
Plasmodium falciparum (Pfa) pfa2134 PF08_0040
Rattus norvegicus (Rno) rno18908 ENSRNOP00000009726
(RGD:1307679)
Q5PQL4
Saccharomyces cerevisiae (Sce) sce5996 YOR250C
(S000005776)
Schizosaccharomyces pombe (Spo) spo1822 SPAC22H10.05c Q10299
Yarrowia lipolytica (Yli) yli6619 YALI0F31031g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2138968
GO:0005634 nucleus C
IDA
AthAt3g04680
SpoSPAC22H10.05c
GO:0005829 cytosol C
IDA
SpoSPAC22H10.05c
GO:0005849 mRNA cleavage factor complex C
IPI
AthAt3g04680
SceS000005776
ISS
AthAt3g04680
SpoSPAC22H10.05c
GO:0003674 molecular_function F
ND
DmeFBgn0033842
MmuMGI:2138968
GO:0003723 RNA binding F
IDA
SceS000005776
GO:0005488 binding F
ISS
AthAt3g04680
GO:0000003 reproduction P
IMP
CelWBGene00010304
GO:0002119 nematode larval development P
IMP
CelWBGene00010304
GO:0006378 mRNA polyadenylation P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0006379 mRNA cleavage P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0006397 mRNA processing P
IMP
AthAt3g04680
GO:0008150 biological_process P
ND
MmuMGI:2138968
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00010304
GO:0009908 flower development P
IMP
AthAt3g04680
GO:0010228 vegetative to reproductive phase transition of
meristem
P
IMP
AthAt3g04680
GO:0031123 RNA 3'-end processing P
RCA
SceS000005776
GO:0031124 mRNA 3'-end processing P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0040007 growth P
IMP
CelWBGene00010304
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00010304
GO:0040015 negative regulation of multicellular organism
growth
P
IMP
CelWBGene00010304
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00010304
GO:0048827 phyllome development P
IMP
AthAt3g04680

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC22H10.05c
(Q10299)
YOR250C
(S000005776)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22H10.05c
GO:0005829 cytosol C
IDA
SpoSPAC22H10.05c
GO:0005849 mRNA cleavage factor complex C
IPI
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0003723 RNA binding F
IDA
SceS000005776
GO:0006378 mRNA polyadenylation P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0006379 mRNA cleavage P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c
GO:0031123 RNA 3'-end processing P
RCA
SceS000005776
GO:0031124 mRNA 3'-end processing P
IDA
SceS000005776
ISS
SpoSPAC22H10.05c

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk