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Search term: YOR275C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RIM20
SGD link S000005801
Alternative ID YOR275C
Description Protein involved in proteolytic activation of Rim101p in response to alkaline pH; PalA/AIP1/Alix family member; interaction with the ESCRT-III subunit Snf7p suggests a relationship between pH response and multivesicular body formation
Synonyms YOR275C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2220 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED Predicted signal transduction protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g15130 GI:15218061
Caenorhabditis elegans (Cel) CE07761 GI:17557386
Caenorhabditis elegans (Cel) CE24434_1 GI:17510265
Caenorhabditis elegans (Cel) CE25075
(WBGene00007010)		 GI:17554570 P34552
Drosophila melanogaster (Dme) 7293132 GI:7293132
Drosophila melanogaster (Dme) 7294357_1 GI:7294357
Drosophila melanogaster (Dme) 7301622 GI:7301622
Homo sapiens (Hsa) HsM7019487 GI:7019487
Homo sapiens (Hsa) Hs14736297_1 GI:14736297
Homo sapiens (Hsa) Hs20535508 GI:20535508
Homo sapiens (Hsa) Hs14916439 GI:14916439
Homo sapiens (Hsa) Hs19882237 GI:19882237
Saccharomyces cerevisiae (Sce) YOR275c
(S000005801)		 GI:6324849 Q12033
Saccharomyces cerevisiae (Sce) YPL084w
(S000006005)		 GI:6325173 P48582
Schizosaccharomyces pombe (Spo) SPAC17G6.05c GI:19115164 O13783
Schizosaccharomyces pombe (Spo) SPAC2G11.05c GI:19113997 Q09807


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005624 membrane fraction C
IDA
SceS000006005
GO:0005634 nucleus C
IDA
SceS000005801
SpoSPAC2G11.05c
GO:0005737 cytoplasm C
IDA
SceS000005801
S000006005
ISS
SpoSPAC2G11.05c
SPAC17G6.05c
GO:0005768 endosome C
IDA
SceS000006005
ISS
SpoSPAC17G6.05c
NAS
SpoSPAC2G11.05c
GO:0005771 multivesicular body C
IDA
CelWBGene00007010
GO:0005773 vacuole C
NAS
SpoSPAC17G6.05c
GO:0005816 spindle pole body C
IDA
SpoSPAC2G11.05c
GO:0005829 cytosol C
IDA
SpoSPAC2G11.05c
GO:0031410 cytoplasmic vesicle C
IDA
CelWBGene00007010
GO:0032153 cell division site C
IDA
SpoSPAC2G11.05c
GO:0055037 recycling endosome C
IDA
CelWBGene00007010
GO:0003674 molecular_function F
ND
SceS000005801
SpoSPAC17G6.05c
SPAC2G11.05c
GO:0004843 ubiquitin-specific protease activity F
IDA
SceS000006005
GO:0005112 Notch binding F
IPI
CelWBGene00007010
GO:0008022 protein C-terminus binding F
IPI
CelWBGene00007010
GO:0001403 invasive growth in response to glucose
limitation		 P
IMP
SceS000005801
GO:0006508 proteolysis P
IMP
SceS000005801
GO:0006511 ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000006005
ISS
SpoSPAC17G6.05c
GO:0006914 autophagy P
RCA
SceS000006005
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000006005
GO:0007032 endosome organization P
IMP
CelWBGene00007010
GO:0007034 vacuolar transport P
IMP
SceS000006005
GO:0007584 response to nutrient P
IMP
SceS000006005
GO:0009268 response to pH P
IMP
SceS000005801
ISS
SpoSPAC2G11.05c
GO:0016485 protein processing P
IDA
SceS000005801
IGI
SceS000005801
IMP
SceS000005801
ISS
SpoSPAC2G11.05c
GO:0016579 protein deubiquitination P
IGI
SceS000006005
IPI
SceS000006005
GO:0030163 protein catabolic process P
IMP
CelWBGene00007010
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
IMP
SceS000005801
GO:0030437 ascospore formation P
ISS
SpoSPAC2G11.05c
GO:0032456 endocytic recycling P
IMP
CelWBGene00007010
GO:0033365 protein localization in organelle P
IMP
CelWBGene00007010
GO:0042176 regulation of protein catabolic
process		 P
IMP
CelWBGene00007010
GO:0043328 protein targeting to vacuole involved in
ubiquitin-dependent protein catabolic process via
the multivesicular body sorting
pathway		 P
IMP
SceS000006005
ISS
SpoSPAC17G6.05c
GO:0045184 establishment of protein localization P
RCA
SceS000006005

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
22614

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PDCD6IP GI:22027538
Pan troglodytes (Ptr) PDCD6IP GI:114585931
Canis familiaris (Cfa) PDCD6IP GI:73989664
Mus musculus (Mmu) Pdcd6ip
(MGI:1333753)		 GI:6755002 Q3TED2
Gallus gallus (Gga) PDCD6IP GI:71896465
Drosophila melanogaster (Dme) ALiX GI:21357721
Anopheles gambiae (Aga) AgaP_AGAP005531 GI:118786620
Caenorhabditis elegans (Cel) alx-1
(CE25075;
WBGene00007010)		 GI:71989424
Saccharomyces cerevisiae (Sce) RIM20
(S000005801)		 GI:6324849 Q12033
Kluyveromyces lactis (Kla) KLLA0C07348g GI:50305135
Eremothecium gossypii (Ego) AGOS_AER342C GI:45190944
Magnaporthe grisea (Mgr) MGG_00833 GI:39974041
Neurospora crassa (Ncr) NCU05876.1 GI:32410501
Arabidopsis thaliana (Ath) AT1G15130 GI:15218061
Oryza sativa (Osa) Os10g0495300 GI:115482714


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
DmeALiX
GO:0005634 nucleus C
IDA
SceS000005801
GO:0005737 cytoplasm C
IDA
HsaPDCD6IP
SceS000005801
GO:0005771 multivesicular body C
IDA
CelWBGene00007010
GO:0005829 cytosol C
IDA
MmuMGI:1333753
GO:0031410 cytoplasmic vesicle C
IDA
CelWBGene00007010
GO:0055037 recycling endosome C
IDA
CelWBGene00007010
GO:0003674 molecular_function F
ND
SceS000005801
GO:0004871 signal transducer activity F
ISS
DmeALiX
GO:0005112 Notch binding F
IPI
CelWBGene00007010
GO:0005515 protein binding F
IPI
HsaPDCD6IP
MmuMGI:1333753
GO:0008022 protein C-terminus binding F
IPI
CelWBGene00007010
GO:0046983 protein dimerization activity F
IPI
MmuMGI:1333753
GO:0048306 calcium-dependent protein binding F
IPI
HsaPDCD6IP
GO:0001403 invasive growth in response to glucose
limitation		 P
IMP
SceS000005801
GO:0006508 proteolysis P
IMP
SceS000005801
GO:0006915 apoptosis P
NAS
DmeALiX
TAS
MmuMGI:1333753
GO:0007032 endosome organization P
IMP
CelWBGene00007010
GO:0008624 induction of apoptosis by extracellular
signals		 P
ISO
MmuMGI:1333753
GO:0008630 DNA damage response, signal transduction resulting
in induction of apoptosis		 P
ISO
MmuMGI:1333753
GO:0009268 response to pH P
IMP
SceS000005801
GO:0016485 protein processing P
IDA
SceS000005801
IGI
SceS000005801
IMP
SceS000005801
GO:0030041 actin filament polymerization P
IMP
DmeALiX
GO:0030163 protein catabolic process P
IMP
CelWBGene00007010
GO:0030435 sporulation resulting in formation of a cellular
spore		 P
IMP
SceS000005801
GO:0032456 endocytic recycling P
IMP
CelWBGene00007010
GO:0033365 protein localization in organelle P
IMP
CelWBGene00007010
GO:0042176 regulation of protein catabolic
process		 P
IMP
CelWBGene00007010
GO:0046330 positive regulation of JNK cascade P
IDA
DmeALiX
NAS
DmeALiX

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2493

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga941 ENSANGP00000021175
Ashbya gossypii (Ago) ago2843 AER342C
Arabidopsis thaliana (Ath) ath1607 At1g15130.1
Caenorhabditis elegans (Cel) cel13772 R10E12.1a
(CE25075;
WBGene00007010)
Caenorhabditis elegans (Cel) cel13773 R10E12.1b
(CE00310)
Caenorhabditis elegans (Cel) cel13774 R10E12.1c
(CE31853)
Candida glabrata (Cgl) cgl4552 CAGL0L10956g
Candida glabrata (Cgl) cgl4936 CAGL0M06413g
Cryptococcus neoformans (Cne) cne4120 177.m02878
Dictyostelium discoideum (Ddi) ddi12087 DDB0185177
Debaryomyces hansenii (Dha) dha4913 DEHA0F11924g
Drosophila melanogaster (Dme) dme14806 CG12876-PA
(FBgn0039541)
Danio rerio (Dre) dre29829 ENSDARP00000028574
Danio rerio (Dre) dre29828 ENSDARP00000031677
(pdcd6ip)		 Q7SY03
Takifugu rubripes (Fru) fru30661 SINFRUP00000153589
Gallus gallus (Gga) gga10174 ENSGALP00000019634
(PDCD6IP)		 Q5ZJ70
Homo sapiens (Hsa) hsa22228 ENSP00000307387
(PDCD6IP)		 Q8WUM4
Kluyveromyces lactis (Kla) kla1525 KLLA0C07348g
Mus musculus (Mmu) mmu28402 ENSMUSP00000035086
(MGI:1333753)		 Q3TED2
Neurospora crassa (Ncr) ncr5713 NCU05876.2
Neurospora crassa (Ncr) ncr7793 NCU08001.2
Oryza sativa (Osa) osa40747 5192.m00125
Rattus norvegicus (Rno) rno29385 ENSRNOP00000012114
(RGD:68357)		 Q9QZA2
Saccharomyces cerevisiae (Sce) sce6021 YOR275C
(S000005801)
Schizosaccharomyces pombe (Spo) spo1591 SPAC17G6.05c O13783
Schizosaccharomyces pombe (Spo) spo1021 SPAC2G11.05c Q09807
Yarrowia lipolytica (Yli) yli3547 YALI0D20130g