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Search term: YOR290C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNF2
SGD link S000005816
Alternative ID YOR290C
Description Catalytic subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p
Synonyms YOR290C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0386 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGINFORMATION STORAGE AND PROCESSING Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g28290 GI:15226372
Arabidopsis thaliana (Ath) At2g46010 GI:15225918
Arabidopsis thaliana (Ath) At2g46020 GI:15225919
Arabidopsis thaliana (Ath) At3g06010 GI:15230608
Arabidopsis thaliana (Ath) At5g19310 GI:15239711
Caenorhabditis elegans (Cel) CE05553
(WBGene00004204)		 GI:17539642 Q19106
Caenorhabditis elegans (Cel) CE27114
(WBGene00016868)		 GI:17551114 Q22944
Drosophila melanogaster (Dme) 7294205
(FBgn0000212)		 GI:17985967
Homo sapiens (Hsa) Hs21071048 GI:21071048
Homo sapiens (Hsa) Hs21071050 GI:21071050
Homo sapiens (Hsa) Hs21071056 GI:21071056 Q59FZ6
Saccharomyces cerevisiae (Sce) YIL126w
(S000001388)		 GI:6322065 P32597
Saccharomyces cerevisiae (Sce) YOR290c
(S000005816)		 GI:6324864 P22082
Schizosaccharomyces pombe (Spo) SPAC1250.01 GI:19115773 Q9UTN6
Schizosaccharomyces pombe (Spo) SPCC1620.14c GI:19075972 O94421
Arabidopsis thaliana (Ath) At2g28290 GI:15226372
Arabidopsis thaliana (Ath) At2g46010 GI:15225918
Arabidopsis thaliana (Ath) At2g46020 GI:15225919
Arabidopsis thaliana (Ath) At3g06010 GI:15230608
Arabidopsis thaliana (Ath) At5g19310 GI:15239711
Caenorhabditis elegans (Cel) CE05553
(WBGene00004204)		 GI:17539642 Q19106
Caenorhabditis elegans (Cel) CE27114
(WBGene00016868)		 GI:17551114 Q22944
Drosophila melanogaster (Dme) 7294205
(FBgn0000212)		 GI:17985967
Homo sapiens (Hsa) Hs21071048 GI:21071048
Homo sapiens (Hsa) Hs21071050 GI:21071050
Homo sapiens (Hsa) Hs21071056 GI:21071056 Q59FZ6
Saccharomyces cerevisiae (Sce) YIL126w
(S000001388)		 GI:6322065 P32597
Saccharomyces cerevisiae (Sce) YOR290c
(S000005816)		 GI:6324864 P22082
Schizosaccharomyces pombe (Spo) SPAC1250.01 GI:19115773 Q9UTN6
Schizosaccharomyces pombe (Spo) SPCC1620.14c GI:19075972 O94421
Arabidopsis thaliana (Ath) At2g28290 GI:15226372
Arabidopsis thaliana (Ath) At2g46010 GI:15225918
Arabidopsis thaliana (Ath) At2g46020 GI:15225919
Arabidopsis thaliana (Ath) At3g06010 GI:15230608
Arabidopsis thaliana (Ath) At5g19310 GI:15239711
Caenorhabditis elegans (Cel) CE05553
(WBGene00004204)		 GI:17539642 Q19106
Caenorhabditis elegans (Cel) CE27114
(WBGene00016868)		 GI:17551114 Q22944
Drosophila melanogaster (Dme) 7294205
(FBgn0000212)		 GI:17985967
Homo sapiens (Hsa) Hs21071048 GI:21071048
Homo sapiens (Hsa) Hs21071050 GI:21071050
Homo sapiens (Hsa) Hs21071056 GI:21071056 Q59FZ6
Saccharomyces cerevisiae (Sce) YIL126w
(S000001388)		 GI:6322065 P32597
Saccharomyces cerevisiae (Sce) YOR290c
(S000005816)		 GI:6324864 P22082
Schizosaccharomyces pombe (Spo) SPAC1250.01 GI:19115773 Q9UTN6
Schizosaccharomyces pombe (Spo) SPCC1620.14c GI:19075972 O94421


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000228 nuclear chromosome C
RCA
SceS000005816
GO:0000785 chromatin C
RCA
SceS000005816
GO:0000790 nuclear chromatin C
IC
SpoSPAC1250.01
SPCC1620.14c
RCA
SceS000005816
GO:0005575 cellular_component C
ND
AthAt5g19310
At3g06010
GO:0005634 nucleus C
IDA
AthAt2g46020
At2g28290
SceS000005816
SpoSPAC1250.01
SPCC1620.14c
NAS
DmeFBgn0000212
GO:0005654 nucleoplasm C
RCA
SceS000005816
GO:0005819 spindle C
IDA
SpoSPCC1620.14c
GO:0005829 cytosol C
IDA
AthAt2g28290
At2g46020
GO:0016514 SWI/SNF complex C
IDA
SceS000005816
SpoSPCC1620.14c
IMP
SceS000005816
GO:0016585 chromatin remodeling complex C
IDA
AthAt2g46020
ISS
AthAt2g28290
DmeFBgn0000212
SpoSPCC1620.14c
GO:0016586 RSC complex C
IDA
SceS000001388
SpoSPAC1250.01
RCA
SceS000005816
GO:0035060 brahma complex C
IDA
DmeFBgn0000212
TAS
DmeFBgn0000212
GO:0044427 chromosomal part C
RCA
SceS000005816
GO:0044451 nucleoplasm part C
RCA
SceS000005816
GO:0044454 nuclear chromosome part C
RCA
SceS000005816
GO:0003677 DNA binding F
IC
SpoSPAC1250.01
SPCC1620.14c
IDA
AthAt2g46020
ISS
AthAt5g19310
At2g46020
At3g06010
GO:0003682 chromatin binding F
IPI
AthAt2g28290
GO:0003713 transcription coactivator activity F
ISS
DmeFBgn0000212
NAS
DmeFBgn0000212
GO:0004003 ATP-dependent DNA helicase activity F
ISS
SpoSPAC1250.01
SPCC1620.14c
GO:0004386 helicase activity F
IDA
SceS000001388
ISS
AthAt5g19310
At2g46020
RCA
SceS000005816
GO:0005515 protein binding F
IPI
DmeFBgn0000212
GO:0005524 ATP binding F
IC
SpoSPAC1250.01
SPCC1620.14c
ISS
AthAt5g19310
At2g46020
At3g06010
GO:0008094 DNA-dependent ATPase activity F
IDA
SceS000005816
S000001388
S000001388
IMP
SceS000005816
NAS
DmeFBgn0000212
GO:0016251 general RNA polymerase II transcription factor
activity		 F
ISS
DmeFBgn0000212
SpoSPAC1250.01
SPCC1620.14c
TAS
SceS000005816
GO:0016887 ATPase activity F
IDA
SceS000001388
ISS
AthAt2g28290
GO:0030528 transcription regulator activity F
ISS
AthAt2g46020
GO:0043565 sequence-specific DNA binding F
RCA
SceS000005816
GO:0070577 histone acetyl-lysine binding F
IDA
SceS000001388
S000005816
GO:0000003 reproduction P
IMP
CelWBGene00004204
GO:0000086 G2/M transition of mitotic cell
cycle		 P
IMP
SceS000001388
GO:0006200 ATP catabolic process P
ISS
SpoSPAC1250.01
SPCC1620.14c
GO:0006302 double-strand break repair P
IMP
SceS000005816
S000001388
GO:0006337 nucleosome disassembly P
IDA
SceS000001388
GO:0006338 chromatin remodeling P
IGI
SpoSPCC1620.14c
ISS
SpoSPAC1250.01
GO:0006366 transcription from RNA polymerase II
promoter		 P
IDA
SpoSPAC1250.01
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
IDA
SceS000001388
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0000212
GO:0007010 cytoskeleton organization P
IGI
SceS000001388
IMP
SceS000001388
GO:0007059 chromosome segregation P
IGI
SceS000001388
GO:0007126 meiosis P
IMP
SceS000001388
GO:0007131 reciprocal meiotic recombination P
IMP
SpoSPCC1620.14c
GO:0007409 axonogenesis P
IMP
DmeFBgn0000212
GO:0007474 imaginal disc-derived wing vein
specification		 P
IMP
DmeFBgn0000212
GO:0007517 muscle organ development P
IMP
DmeFBgn0000212
GO:0008150 biological_process P
ND
AthAt5g19310
GO:0008586 imaginal disc-derived wing vein
morphogenesis		 P
IMP
DmeFBgn0000212
GO:0008587 imaginal disc-derived wing margin
morphogenesis		 P
IMP
DmeFBgn0000212
GO:0009408 response to heat P
IMP
AthAt3g06010
GO:0009414 response to water deprivation P
IMP
AthAt3g06010
GO:0009611 response to wounding P
IEP
AthAt2g28290
GO:0009651 response to salt stress P
IMP
AthAt3g06010
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004204
GO:0009908 flower development P
IMP
AthAt2g28290
GO:0010199 organ boundary specification between lateral
organs and the meristem		 P
IGI
AthAt2g46020
At2g28290
GO:0010552 positive regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPCC1620.14c
IMP
SceS000005816
GO:0010553 negative regulation of gene-specific transcription
from RNA polymerase II promoter		 P
IEP
SpoSPCC1620.14c
GO:0031055 chromatin remodeling at centromere P
IMP
SceS000001388
GO:0035172 hemocyte proliferation P
TAS
DmeFBgn0000212
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00004204
GO:0040029 regulation of gene expression,
epigenetic		 P
IMP
AthAt2g46020
At2g28290
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00004204
GO:0042766 nucleosome mobilization P
IMP
SceS000005816
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000005816
S000001388
IMP
SceS000005816
ISS
SpoSPCC1620.14c
NAS
AthAt2g46020
At2g28290
TAS
AthAt2g46020
GO:0045449 regulation of transcription P
IMP
SceS000001388
ISS
SpoSPAC1250.01
GO:0045893 positive regulation of transcription,
DNA-dependent		 P
IDA
SceS000005816
IMP
SceS000005816
GO:0045941 positive regulation of transcription P
RCA
SceS000005816
S000001388
GO:0048096 chromatin-mediated maintenance of
transcription		 P
NAS
DmeFBgn0000212
GO:0048477 oogenesis P
TAS
DmeFBgn0000212
GO:0048666 neuron development P
IMP
DmeFBgn0000212
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0000212

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
55712

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SMARCA4 GI:192807323
Pan troglodytes (Ptr) SMARCA4 GI:114675380
Canis familiaris (Cfa) SMARCA4 GI:73986636
Mus musculus (Mmu) Smarca4
(MGI:88192)		 GI:76253779 O35845
Rattus norvegicus (Rno) Smarca4
(RGD:621728)		 GI:62653326
Drosophila melanogaster (Dme) brm
(FBgn0000212)		 GI:17985967
Anopheles gambiae (Aga) AgaP_AGAP010462 GI:118781463
Caenorhabditis elegans (Cel) psa-4
(CE05553;
WBGene00004204)		 GI:17539642 Q19106
Saccharomyces cerevisiae (Sce) SNF2
(S000005816)		 GI:6324864 P22082
Kluyveromyces lactis (Kla) KLLA0B08327g GI:50303907
Eremothecium gossypii (Ego) AGOS_AFR562C GI:45199080
Arabidopsis thaliana (Ath) AT5G19310 GI:30687235
Arabidopsis thaliana (Ath) ATCHR12 GI:15230608
Oryza sativa (Osa) Os05g0144300 GI:115462049