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Search term: YOR308C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SNU66
SGD link S000005835
Alternative ID YOR308C
Description Component of the U4/U6.U5 snRNP complex involved in pre-mRNA splicing via spliceosome; has homology to human SART-1 and to an S. pombe protein; snu66 null mutation confers cold-sensitivity but is not lethal at normal growth temperatures
Synonyms YOR308C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2217 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U4/U6.U5 snRNP associated protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g16780 GI:15237413
Caenorhabditis elegans (Cel) CE27372
(WBGene00017605)		 GI:17559888 O01524
Drosophila melanogaster (Dme) 7297892 GI:7297892
Homo sapiens (Hsa) Hs10863889
(SART1)		 GI:10863889 O43290
Saccharomyces cerevisiae (Sce) YOR308c
(S000005835)		 GI:6324884 Q12420
Schizosaccharomyces pombe (Spo) SPAC167.03c GI:19114294 O94538


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt5g16780
SpoSPAC167.03c
GO:0005654 nucleoplasm C
IDA
HsaSART1
GO:0005681 spliceosomal complex C
IC
SpoSPAC167.03c
GO:0005730 nucleolus C
IDA
AthAt5g16780
GO:0005737 cytoplasm C
TAS
HsaSART1
GO:0005829 cytosol C
TAS
HsaSART1
GO:0015030 Cajal body C
IDA
HsaSART1
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005835
ISS
SpoSPAC167.03c
GO:0003674 molecular_function F
ND
AthAt5g16780
HsaSART1
SceS000005835
SpoSPAC167.03c
GO:0003723 RNA binding F
RCA
SceS000005835
GO:0000003 reproduction P
IMP
CelWBGene00017605
GO:0000387 spliceosomal snRNP assembly P
TAS
HsaSART1
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005835
SpoSPAC167.03c
IPI
SceS000005835
GO:0000481 maturation of 5S rRNA P
IGI
SceS000005835
IMP
SceS000005835
ISS
SpoSPAC167.03c
GO:0002119 nematode larval development P
IMP
CelWBGene00017605
GO:0007050 cell cycle arrest P
NAS
HsaSART1
GO:0008629 induction of apoptosis by intracellular
signals		 P
NAS
HsaSART1
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017605
GO:0009908 flower development P
IMP
AthAt5g16780
GO:0009933 meristem structural organization P
IMP
AthAt5g16780
GO:0010087 phloem or xylem histogenesis P
IMP
AthAt5g16780
GO:0010305 leaf vascular tissue pattern formation P
IMP
AthAt5g16780
GO:0010588 cotyledon vascular tissue pattern
formation		 P
IMP
AthAt5g16780
GO:0016071 mRNA metabolic process P
RCA
SceS000005835
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00017605
GO:0040007 growth P
IMP
CelWBGene00017605
GO:0040011 locomotion P
IMP
CelWBGene00017605
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017605
GO:0045585 positive regulation of cytotoxic T cell
differentiation		 P
IDA
HsaSART1
GO:0048364 root development P
IMP
AthAt5g16780
GO:0048366 leaf development P
IMP
AthAt5g16780
GO:0048367 shoot development P
IMP
AthAt5g16780
GO:0048528 post-embryonic root development P
IMP
AthAt5g16780

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
81796

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) snu66
(SPAC167.03c)		 GI:19114294 O94538
Saccharomyces cerevisiae (Sce) SNU66
(S000005835)		 GI:6324884 Q12420
Kluyveromyces lactis (Kla) KLLA0F08591g GI:50310895
Eremothecium gossypii (Ego) AGOS_AFR327C GI:45198845
Magnaporthe grisea (Mgr) MGG_01095 GI:39973517


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC167.03c
GO:0005681 spliceosomal complex C
IC
SpoSPAC167.03c
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005835
ISS
SpoSPAC167.03c
GO:0003674 molecular_function F
ND
SceS000005835
SpoSPAC167.03c
GO:0003723 RNA binding F
RCA
SceS000005835
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005835
SpoSPAC167.03c
IPI
SceS000005835
GO:0000481 maturation of 5S rRNA P
IGI
SceS000005835
IMP
SceS000005835
ISS
SpoSPAC167.03c
GO:0016071 mRNA metabolic process P
RCA
SceS000005835

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2299

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga12707 ENSANGP00000002211
Anopheles gambiae (Aga) aga12708 ENSANGP00000028980
Ashbya gossypii (Ago) ago3519 AFR327C
Arabidopsis thaliana (Ath) ath23908 At5g16780.1
Caenorhabditis elegans (Cel) cel6752 F19F10.9
(CE27372;
WBGene00017605)
Candida glabrata (Cgl) cgl2943 CAGL0I09768g
Cryptococcus neoformans (Cne) cne324 162.m02902
Cryptococcus neoformans (Cne) cne325 162.m03046
Dictyostelium discoideum (Ddi) ddi12437 DDB0216406
Debaryomyces hansenii (Dha) dha6088 DEHA0G08657g
Drosophila melanogaster (Dme) dme2054 CG6686-PA
(FBgn0032388)
Drosophila melanogaster (Dme) dme2055 CG6686-PB
(FBgn0032388)
Danio rerio (Dre) dre13835 ENSDARP00000002453
(sart1)		 Q6DG11
Takifugu rubripes (Fru) fru17627 SINFRUP00000160416
Homo sapiens (Hsa) hsa6001 ENSP00000310448
(SART1)		 O43290
Kluyveromyces lactis (Kla) kla4470 KLLA0F08591g
Mus musculus (Mmu) mmu13132 ENSMUSP00000047397
(MGI:1309453)		 Q9Z315
Oryza sativa (Osa) osa29159 4264.m00194
Oryza sativa (Osa) osa37479 4866.m00090
Oryza sativa (Osa) osa37484 4866.m00112
Plasmodium falciparum (Pfa) pfa2888 PFC1060c
Rattus norvegicus (Rno) rno3498 ENSRNOP00000027812
(RGD:61930)		 Q5XIW8
Saccharomyces cerevisiae (Sce) sce6057 YOR308C
(S000005835)
Schizosaccharomyces pombe (Spo) spo1068 SPAC167.03c O94538
Yarrowia lipolytica (Yli) yli1177 YALI0B10692g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt5g16780
SpoSPAC167.03c
GO:0005681 spliceosomal complex C
IC
SpoSPAC167.03c
GO:0005730 nucleolus C
IDA
AthAt5g16780
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005835
ISS
SpoSPAC167.03c
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0032388
GO:0003674 molecular_function F
ND
AthAt5g16780
SceS000005835
SpoSPAC167.03c
GO:0003723 RNA binding F
RCA
SceS000005835
GO:0000003 reproduction P
IMP
CelWBGene00017605
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0032388
IMP
SceS000005835
SpoSPAC167.03c
IPI
SceS000005835
GO:0000481 maturation of 5S rRNA P
IGI
SceS000005835
IMP
SceS000005835
ISS
SpoSPAC167.03c
GO:0002119 nematode larval development P
IMP
CelWBGene00017605
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00017605
GO:0009908 flower development P
IMP
AthAt5g16780
GO:0009933 meristem structural organization P
IMP
AthAt5g16780
GO:0010087 phloem or xylem histogenesis P
IMP
AthAt5g16780
GO:0010305 leaf vascular tissue pattern formation P
IMP
AthAt5g16780
GO:0010588 cotyledon vascular tissue pattern
formation		 P
IMP
AthAt5g16780
GO:0016071 mRNA metabolic process P
RCA
SceS000005835
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00017605
GO:0040007 growth P
IMP
CelWBGene00017605
GO:0040011 locomotion P
IMP
CelWBGene00017605
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00017605
GO:0048364 root development P
IMP
AthAt5g16780
GO:0048366 leaf development P
IMP
AthAt5g16780
GO:0048367 shoot development P
IMP
AthAt5g16780
GO:0048528 post-embryonic root development P
IMP
AthAt5g16780

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC167.03c
(O94538)		 YOR308C
(S000005835)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC167.03c
GO:0005681 spliceosomal complex C
IC
SpoSPAC167.03c
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000005835
ISS
SpoSPAC167.03c
GO:0003674 molecular_function F
ND
SceS000005835
SpoSPAC167.03c
GO:0003723 RNA binding F
RCA
SceS000005835
GO:0000398 nuclear mRNA splicing, via spliceosome P
IMP
SceS000005835
SpoSPAC167.03c
IPI
SceS000005835
GO:0000481 maturation of 5S rRNA P
IGI
SceS000005835
IMP
SceS000005835
ISS
SpoSPAC167.03c
GO:0016071 mRNA metabolic process P
RCA
SceS000005835

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GO info in one table:

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