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Search term: YOR340C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPA43
SGD link S000005867
Alternative ID YOR340C
Description RNA polymerase I subunit A43
Synonyms YOR340C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4134 --DHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA-dependent RNA polymerase I

Species KOG link NCBI link UniProt link
Drosophila melanogaster (Dme) 7297185 GI:7297185 Q9VM72
Homo sapiens (Hsa) Hs20539462 GI:20539462
Saccharomyces cerevisiae (Sce) YOR340c
(S000005867)		 GI:6324916 P46669
Schizosaccharomyces pombe (Spo) SPBC3B9.07c GI:19113457 O43036


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3B9.07c
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005867
GO:0005730 nucleolus C
IDA
SpoSPBC3B9.07c
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000005867
TAS
SpoSPBC3B9.07c
GO:0005829 cytosol C
IDA
SpoSPBC3B9.07c
GO:0044451 nucleoplasm part C
RCA
SceS000005867
GO:0003899 DNA-directed RNA polymerase activity F
IC
SpoSPBC3B9.07c
IDA
SceS000005867
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SpoSPBC3B9.07c
RCA
SceS000005867
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000005867
GO:0051049 regulation of transport P
RCA
SceS000005867

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
31948

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) rpa21 GI:19113457
Saccharomyces cerevisiae (Sce) RPA43
(S000005867)		 GI:6324916 P46669
Kluyveromyces lactis (Kla) KLLA0F02321g GI:50310331
Eremothecium gossypii (Ego) AGOS_ADR377W GI:45188250


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005867
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000005867
GO:0044451 nucleoplasm part C
RCA
SceS000005867
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000005867
GO:0006360 transcription from RNA polymerase I
promoter		 P
RCA
SceS000005867
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000005867
GO:0051049 regulation of transport P
RCA
SceS000005867

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_5303

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga9272 ENSANGP00000016750
Ashbya gossypii (Ago) ago2118 ADR377W
Candida glabrata (Cgl) cgl1180 CAGL0E05478g
Cryptococcus neoformans (Cne) cne3543 176.m02274
Dictyostelium discoideum (Ddi) ddi11571 DDB0216290
Debaryomyces hansenii (Dha) dha927 DEHA0B05467g
Drosophila melanogaster (Dme) dme1148 CG13773-PA
(FBgn0042092)
Danio rerio (Dre) dre10857 ENSDARP00000032351
Takifugu rubripes (Fru) fru29168 SINFRUP00000144186
Gallus gallus (Gga) gga9814 ENSGALP00000017640
(TWISTNB)
Homo sapiens (Hsa) hsa28299 ENSP00000222567
(TWISTNB)		 Q3B726
Kluyveromyces lactis (Kla) kla4184 KLLA0F02321g
Mus musculus (Mmu) mmu5618 ENSMUSP00000020877
(MGI:106292)		 Q78WZ7
Neurospora crassa (Ncr) ncr6973 NCU07166.2
Rattus norvegicus (Rno) rno25000 ENSRNOP00000014373
(RGD:1307824)
Saccharomyces cerevisiae (Sce) sce6093 YOR340C
(S000005867)
Schizosaccharomyces pombe (Spo) spo2107 SPBC3B9.07c O43036
Yarrowia lipolytica (Yli) yli5603 YALI0F06182g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:106292
GO:0005634 nucleus C
IDA
SpoSPBC3B9.07c
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005867
GO:0005730 nucleolus C
IDA
SpoSPBC3B9.07c
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000005867
TAS
SpoSPBC3B9.07c
GO:0005829 cytosol C
IDA
SpoSPBC3B9.07c
GO:0044451 nucleoplasm part C
RCA
SceS000005867
GO:0003674 molecular_function F
ND
MmuMGI:106292
GO:0003899 DNA-directed RNA polymerase activity F
IC
SpoSPBC3B9.07c
IDA
SceS000005867
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SpoSPBC3B9.07c
RCA
SceS000005867
GO:0008150 biological_process P
ND
MmuMGI:106292
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000005867
GO:0051049 regulation of transport P
RCA
SceS000005867

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC3B9.07c
(O43036)		 YOR340C
(S000005867)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3B9.07c
GO:0005666 DNA-directed RNA polymerase III
complex		 C
RCA
SceS000005867
GO:0005730 nucleolus C
IDA
SpoSPBC3B9.07c
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000005867
TAS
SpoSPBC3B9.07c
GO:0005829 cytosol C
IDA
SpoSPBC3B9.07c
GO:0044451 nucleoplasm part C
RCA
SceS000005867
GO:0003899 DNA-directed RNA polymerase activity F
IC
SpoSPBC3B9.07c
IDA
SceS000005867
GO:0006360 transcription from RNA polymerase I
promoter		 P
IC
SpoSPBC3B9.07c
RCA
SceS000005867
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000005867
GO:0051049 regulation of transport P
RCA
SceS000005867

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GO info in one table:

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