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Search term: YOR359W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name VTS1
SGD link S000005886
Alternative ID YOR359W
Description Post-transcriptional gene regulator, flap-structured DNA-binding and RNA-binding protein; shows genetic interactions with Vti1p, a v-SNARE involved in cis-Golgi membrane traffic; stimulates Dna2p endonuclease activity; contains a SAM domain
Synonyms YOR359W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3791 -CDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSINGCELLULAR PROCESSES AND SIGNALING Predicted RNA-binding protein involved in translational regulation

Species KOG link NCBI link UniProt link
Caenorhabditis elegans (Cel) CE18427 GI:17566586
Drosophila melanogaster (Dme) 7295005
(FBgn0016070)		 GI:17737549 B7Z0F5
Homo sapiens (Hsa) Hs20562413_2 GI:20562413
Homo sapiens (Hsa) Hs22048190 GI:22048190
Homo sapiens (Hsa) Hs8922289 GI:8922289
Saccharomyces cerevisiae (Sce) YOR359w
(S000005886)		 GI:6324935 Q08831
Schizosaccharomyces pombe (Spo) SPBC13E7.03c GI:19113050 Q9P6R7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
DmeFBgn0016070
SceS000005886
GO:0005634 nucleus C
IDA
SceS000005886
GO:0005737 cytoplasm C
IDA
DmeFBgn0016070
GO:0005829 cytosol C
IDA
SceS000005886
SpoSPBC13E7.03c
ISS
SpoSPBC13E7.03c
GO:0000900 translation repressor activity, nucleic acid
binding		 F
TAS
DmeFBgn0016070
GO:0003723 RNA binding F
IDA
SceS000005886
ISS
SpoSPBC13E7.03c
GO:0003729 mRNA binding F
NAS
DmeFBgn0016070
TAS
DmeFBgn0016070
GO:0003730 mRNA 3'-UTR binding F
TAS
DmeFBgn0016070
GO:0005515 protein binding F
IPI
DmeFBgn0016070
TAS
DmeFBgn0016070
GO:0030371 translation repressor activity F
IDA
DmeFBgn0016070
NAS
DmeFBgn0016070
TAS
DmeFBgn0016070
GO:0070336 flap-structured DNA binding F
IDA
SceS000005886
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
DmeFBgn0016070
SceS000005886
IPI
SceS000005886
ISS
SpoSPBC13E7.03c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005886
GO:0017148 negative regulation of translation P
IDA
DmeFBgn0016070
TAS
DmeFBgn0016070
GO:0032079 positive regulation of endodeoxyribonuclease
activity		 P
IDA
SceS000005886
IPI
SceS000005886
GO:0043488 regulation of mRNA stability P
IMP
DmeFBgn0016070
GO:0051236 establishment of RNA localization P
IMP
DmeFBgn0016070

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40375

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) VTS1
(S000005886)		 GI:6324935 Q08831
Kluyveromyces lactis (Kla) KLLA0A03641g GI:50302451
Eremothecium gossypii (Ego) AGOS_ADR394W GI:45188266


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000005886
GO:0005634 nucleus C
IDA
SceS000005886
GO:0005829 cytosol C
IDA
SceS000005886
GO:0003723 RNA binding F
IDA
SceS000005886
GO:0070336 flap-structured DNA binding F
IDA
SceS000005886
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
SceS000005886
IPI
SceS000005886
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005886
GO:0032079 positive regulation of endodeoxyribonuclease
activity		 P
IDA
SceS000005886
IPI
SceS000005886

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_13260

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago2134 ADR394W
Candida glabrata (Cgl) cgl3947 CAGL0K09922g
Cryptococcus neoformans (Cne) cne1640 164.m02079
Debaryomyces hansenii (Dha) dha2684 DEHA0D08800g
Kluyveromyces lactis (Kla) kla157 KLLA0A03641g
Neurospora crassa (Ncr) ncr297 NCU00311.2
Saccharomyces cerevisiae (Sce) sce6114 YOR359W
(S000005886)
Schizosaccharomyces pombe (Spo) spo553 SPBC13E7.03c Q9P6R7
Yarrowia lipolytica (Yli) yli265 YALI0A08063g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000005886
GO:0005634 nucleus C
IDA
SceS000005886
GO:0005829 cytosol C
IDA
SceS000005886
SpoSPBC13E7.03c
ISS
SpoSPBC13E7.03c
GO:0003723 RNA binding F
IDA
SceS000005886
ISS
SpoSPBC13E7.03c
GO:0070336 flap-structured DNA binding F
IDA
SceS000005886
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
SceS000005886
IPI
SceS000005886
ISS
SpoSPBC13E7.03c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005886
GO:0032079 positive regulation of endodeoxyribonuclease
activity		 P
IDA
SceS000005886
IPI
SceS000005886

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC13E7.03c
(Q9P6R7)		 YOR359W
(S000005886)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000005886
GO:0005634 nucleus C
IDA
SceS000005886
GO:0005829 cytosol C
IDA
SceS000005886
SpoSPBC13E7.03c
ISS
SpoSPBC13E7.03c
GO:0003723 RNA binding F
IDA
SceS000005886
ISS
SpoSPBC13E7.03c
GO:0070336 flap-structured DNA binding F
IDA
SceS000005886
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening		 P
IMP
SceS000005886
IPI
SceS000005886
ISS
SpoSPBC13E7.03c
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
SceS000005886
GO:0032079 positive regulation of endodeoxyribonuclease
activity		 P
IDA
SceS000005886
IPI
SceS000005886

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