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Search term: YPL010W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RET3
SGD link S000005931
Alternative ID YPL010W
Description Zeta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER
Synonyms YPL010W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3343 ACDHYP-

KOGs classification KOGs description
CELLULAR PROCESSES AND SIGNALING Vesicle coat complex COPI, zeta subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g60970 GI:12323342
Arabidopsis thaliana (Ath) At3g09800 GI:18398640
Arabidopsis thaliana (Ath) At4g08520 GI:7487031
Caenorhabditis elegans (Cel) CE11494
(WBGene00010333)		 GI:17534573 O17901
Drosophila melanogaster (Dme) 7294073 GI:7294073
Homo sapiens (Hsa) Hs7705983
(COPZ2)		 GI:7705983 Q9P299
Homo sapiens (Hsa) Hs7706337
(COPZ1)		 GI:7706337 P61923
Saccharomyces cerevisiae (Sce) YPL010w
(S000005931)		 GI:6325247 P53600
Schizosaccharomyces pombe (Spo) SPCC576.07 GI:19075934 O74891


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC576.07
GO:0005801 cis-Golgi network C
NAS
HsaCOPZ2
GO:0005829 cytosol C
EXP
HsaCOPZ1
IDA
SpoSPCC576.07
GO:0005886 plasma membrane C
IDA
AthAt4g08520
GO:0030125 clathrin vesicle coat C
ISS
AthAt4g08520
At1g60970
At3g09800
GO:0030126 COPI vesicle coat C
IDA
HsaCOPZ1
COPZ2
IMP
SceS000005931
ISS
HsaCOPZ1
SceS000005931
SpoSPCC576.07
NAS
HsaCOPZ2
GO:0003674 molecular_function F
ND
SpoSPCC576.07
GO:0005515 protein binding F
IMP
SceS000005931
GO:0000003 reproduction P
IMP
CelWBGene00010333
GO:0002119 nematode larval development P
IMP
CelWBGene00010333
GO:0006886 intracellular protein transport P
IC
SpoSPCC576.07
IMP
CelWBGene00010333
ISS
AthAt3g09800
At4g08520
At1g60970
NAS
HsaCOPZ2
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
EXP
HsaCOPZ1
IMP
SceS000005931
ISS
SpoSPCC576.07
TAS
HsaCOPZ1
GO:0006891 intra-Golgi vesicle-mediated transport P
IDA
HsaCOPZ1
ISS
HsaCOPZ1
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010333
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00010333
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010333
GO:0016044 cellular membrane organization P
EXP
HsaCOPZ1
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00010333
GO:0032940 secretion by cell P
IMP
CelWBGene00010333
GO:0048205 COPI coating of Golgi vesicle P
EXP
HsaCOPZ1
GO:0048599 oocyte development P
IMP
CelWBGene00010333

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
9366

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) COPZ1 GI:7706337 P61923
Pan troglodytes (Ptr) COPZ1 GI:114644271
Canis familiaris (Cfa) LOC607013 GI:73996125
Canis familiaris (Cfa) LOC609925 GI:73950062
Mus musculus (Mmu) Copz1
(MGI:1929063)		 GI:9789913 P61924
Rattus norvegicus (Rno) Copz1 GI:109481384
Drosophila melanogaster (Dme) zetaCOP GI:21356771
Anopheles gambiae (Aga) AgaP_AGAP006522 GI:158295985
Caenorhabditis elegans (Cel) F59E10.3
(CE11494;
WBGene00010333)		 GI:17534573 O17901
Schizosaccharomyces pombe (Spo) ret3
(SPCC576.07)		 GI:19075934 O74891
Saccharomyces cerevisiae (Sce) RET3
(S000005931)		 GI:6325247 P53600
Kluyveromyces lactis (Kla) KLLA0F27313g GI:50312519
Eremothecium gossypii (Ego) AGOS_AGL016C GI:45201080
Magnaporthe grisea (Mgr) MGG_09294 GI:39958870
Neurospora crassa (Ncr) NCU02538.1 GI:32422587
Arabidopsis thaliana (Ath) AT3G09800 GI:186509930
Arabidopsis thaliana (Ath) AT1G60970 GI:18406956
Arabidopsis thaliana (Ath) AT4G08520 GI:18413126
Oryza sativa (Osa) Os02g0317400 GI:115445785


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC576.07
GO:0005829 cytosol C
EXP
HsaCOPZ1
IDA
SpoSPCC576.07
GO:0005886 plasma membrane C
IDA
AthAt4g08520
GO:0030125 clathrin vesicle coat C
ISS
AthAt4g08520
At1g60970
At3g09800
GO:0030126 COPI vesicle coat C
IDA
HsaCOPZ1
IMP
SceS000005931
ISO
MmuMGI:1929063
ISS
HsaCOPZ1
SceS000005931
SpoSPCC576.07
NAS
DmezetaCOP
GO:0030137 COPI-coated vesicle C
ISS
MmuMGI:1929063
GO:0003674 molecular_function F
ND
MmuMGI:1929063
SpoSPCC576.07
GO:0005515 protein binding F
IMP
SceS000005931
GO:0000003 reproduction P
IMP
CelWBGene00010333
GO:0002119 nematode larval development P
IMP
CelWBGene00010333
GO:0006886 intracellular protein transport P
IC
SpoSPCC576.07
IMP
CelWBGene00010333
ISS
AthAt3g09800
At4g08520
At1g60970
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
EXP
HsaCOPZ1
IMP
SceS000005931
ISS
SpoSPCC576.07
TAS
HsaCOPZ1
GO:0006891 intra-Golgi vesicle-mediated transport P
IDA
HsaCOPZ1
ISS
HsaCOPZ1
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010333
GO:0006911 phagocytosis, engulfment P
IMP
DmezetaCOP
GO:0008150 biological_process P
ND
MmuMGI:1929063
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00010333
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010333
GO:0010883 regulation of lipid storage P
IDA
DmezetaCOP
GO:0016044 cellular membrane organization P
EXP
HsaCOPZ1
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00010333
GO:0032940 secretion by cell P
IMP
CelWBGene00010333
GO:0048205 COPI coating of Golgi vesicle P
EXP
HsaCOPZ1
GO:0048599 oocyte development P
IMP
CelWBGene00010333

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1221

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga1978 ENSANGP00000010037
Ashbya gossypii (Ago) ago4295 AGL016C
Arabidopsis thaliana (Ath) ath5277 At1g60970.1
Arabidopsis thaliana (Ath) ath13061 At3g09800.1
Arabidopsis thaliana (Ath) ath13062 At3g09800.2
Arabidopsis thaliana (Ath) ath18578 At4g08520.1
Caenorhabditis elegans (Cel) cel11093 F59E10.3
(CE11494;
WBGene00010333)
Candida glabrata (Cgl) cgl4462 CAGL0L08800g
Cryptococcus neoformans (Cne) cne5080 186.m04012
Dictyostelium discoideum (Ddi) ddi8161 DDB0188470
Debaryomyces hansenii (Dha) dha5340 DEHA0F21450g
Drosophila melanogaster (Dme) dme9857 CG3948-PA
(FBgn0040512)
Drosophila melanogaster (Dme) dme9858 CG3948-PB
(FBgn0040512)
Drosophila melanogaster (Dme) dme9856 CG3948-PC
(FBgn0040512)
Danio rerio (Dre) dre20733 ENSDARP00000015008
(copz1)		 Q7SXH1
Danio rerio (Dre) dre17283 ENSDARP00000023681
(copz2)		 Q6DKF5
Danio rerio (Dre) dre17292 ENSDARP00000033521
Encephalitozoon cuniculi (Ecu) ecu225 19173394
Takifugu rubripes (Fru) fru14971 SINFRUP00000155450
Homo sapiens (Hsa) hsa13921 ENSP00000006101
(COPZ2)		 Q9P299
Homo sapiens (Hsa) hsa7607 ENSP00000262061
(COPZ1)		 P61923
Kluyveromyces lactis (Kla) kla5295 KLLA0F27313g
Mus musculus (Mmu) mmu4659 ENSMUSP00000018816
(MGI:1929008)		 Q9JHH9
Mus musculus (Mmu) mmu9781 ENSMUSP00000072095
(MGI:1929063)
Neurospora crassa (Ncr) ncr2459 NCU02538.2
Oryza sativa (Osa) osa6379 2448.m00179
Oryza sativa (Osa) osa12967 2850.m00141
Oryza sativa (Osa) osa24810 3870.m00202
Oryza sativa (Osa) osa29375 4269.m00198
Oryza sativa (Osa) osa30630 4352.m00190
Plasmodium falciparum (Pfa) pfa3272 PFD0745c
Rattus norvegicus (Rno) rno5967 ENSRNOP00000012276
Saccharomyces cerevisiae (Sce) sce6164 YPL010W
(S000005931)
Schizosaccharomyces pombe (Spo) spo2559 SPCC576.07 O74891
Yarrowia lipolytica (Yli) yli5901 YALI0F13255g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC576.07
GO:0005829 cytosol C
IDA
SpoSPCC576.07
GO:0005886 plasma membrane C
IDA
AthAt4g08520
GO:0030125 clathrin vesicle coat C
ISS
AthAt4g08520
At1g60970
At3g09800
GO:0030126 COPI vesicle coat C
IMP
SceS000005931
ISO
MmuMGI:1929063
MGI:1929008
ISS
PfaPFD0745c
SceS000005931
SpoSPCC576.07
NAS
DmeFBgn0040512
GO:0030137 COPI-coated vesicle C
ISS
MmuMGI:1929063
MGI:1929008
GO:0003674 molecular_function F
ND
MmuMGI:1929063
MGI:1929008
SpoSPCC576.07
GO:0005515 protein binding F
IMP
SceS000005931
GO:0000003 reproduction P
IMP
CelWBGene00010333
GO:0002119 nematode larval development P
IMP
CelWBGene00010333
GO:0006886 intracellular protein transport P
IC
SpoSPCC576.07
IMP
CelWBGene00010333
ISS
AthAt3g09800
At4g08520
At1g60970
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000005931
ISS
SpoSPCC576.07
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00010333
GO:0006911 phagocytosis, engulfment P
IMP
DmeFBgn0040512
GO:0008150 biological_process P
ND
MmuMGI:1929063
MGI:1929008
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00010333
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00010333
GO:0010883 regulation of lipid storage P
IDA
DmeFBgn0040512
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00010333
GO:0032940 secretion by cell P
IMP
CelWBGene00010333
GO:0048599 oocyte development P
IMP
CelWBGene00010333

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC576.07
(O74891)		 YPL010W
(S000005931)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPCC576.07
GO:0005829 cytosol C
IDA
SpoSPCC576.07
GO:0030126 COPI vesicle coat C
IMP
SceS000005931
ISS
SceS000005931
SpoSPCC576.07
GO:0003674 molecular_function F
ND
SpoSPCC576.07
GO:0005515 protein binding F
IMP
SceS000005931
GO:0006886 intracellular protein transport P
IC
SpoSPCC576.07
GO:0006890 retrograde vesicle-mediated transport, Golgi to
ER		 P
IMP
SceS000005931
ISS
SpoSPCC576.07

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk