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Search term: YPL016W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SWI1
SGD link S000005937
Alternative ID YPL016W
Description Subunit of the SWI/SNF chromatin remodeling complex, which regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; can form the prion [SWI+]
Synonyms YPL016W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2744 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g04880_1 GI:15220344
Arabidopsis thaliana (Ath) At1g20910 GI:15218069
Arabidopsis thaliana (Ath) At1g55650_1 GI:15222755
Arabidopsis thaliana (Ath) At1g76110_1 GI:15222957
Arabidopsis thaliana (Ath) At1g76510 GI:15223076
Arabidopsis thaliana (Ath) At3g13350_1 GI:18399977
Caenorhabditis elegans (Cel) CE25123 GI:17509205
Drosophila melanogaster (Dme) 7291614 GI:7291614
Drosophila melanogaster (Dme) 7293519 GI:7293519
Homo sapiens (Hsa) Hs13259497_1 GI:13259497
Homo sapiens (Hsa) Hs13259499_1 GI:13259499
Homo sapiens (Hsa) Hs13259501_1 GI:13259501
Homo sapiens (Hsa) Hs15295264 GI:15295264
Homo sapiens (Hsa) Hs18572525 GI:18572525
Homo sapiens (Hsa) Hs18576419 GI:18576419
Homo sapiens (Hsa) Hs22035677_1 GI:20478413
Homo sapiens (Hsa) Hs22035679_1 GI:22035679 Q9P2W4
Homo sapiens (Hsa) Hs4885193
(ARID3A)
GI:4885193 Q99856
Homo sapiens (Hsa) Hs5453638
(ARID3B)
GI:5453638 Q8IVW6
Homo sapiens (Hsa) HsM14043028_1 GI:14043028
Homo sapiens (Hsa) HsM14043030_1 GI:14043030
Saccharomyces cerevisiae (Sce) YPL016w
(S000005937)
GI:6325241 P09547
Schizosaccharomyces pombe (Spo) SPBC30B4.04c GI:19112321 O74365


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC30B4.04c
GO:0005622 intracellular C
ISS
AthAt1g76510
At1g20910
GO:0005634 nucleus C
IDA
SpoSPBC30B4.04c
NAS
HsaARID3B
ARID3A
GO:0005816 spindle pole body C
IDA
SpoSPBC30B4.04c
GO:0009507 chloroplast C
IDA
AthAt1g55650
GO:0016514 SWI/SNF complex C
IDA
SceS000005937
SpoSPBC30B4.04c
IMP
SceS000005937
GO:0003677 DNA binding F
ISS
SpoSPBC30B4.04c
NAS
HsaARID3B
GO:0003700 transcription factor activity F
ISS
AthAt1g76110
At1g55650
At1g76510
At3g13350
At1g20910
At1g04880
NAS
HsaARID3A
GO:0016251 general RNA polymerase II transcription factor
activity
F
ISS
SpoSPBC30B4.04c
TAS
SceS000005937
GO:0006338 chromatin remodeling P
ISS
SpoSPBC30B4.04c
GO:0006355 regulation of transcription, DNA-dependent P
NAS
HsaARID3A
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IDA
SpoSPBC30B4.04c
IMP
SceS000005937
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005937
GO:0008150 biological_process P
ND
HsaARID3B
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000005937
GO:0045449 regulation of transcription P
TAS
AthAt1g76510
At1g04880
At1g76110
At1g20910
GO:0045893 positive regulation of transcription,
DNA-dependent
P
IDA
SceS000005937
GO:0045941 positive regulation of transcription P
RCA
SceS000005937

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
49113

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SWI1
(S000005937)
GI:6325241 P09547
Kluyveromyces lactis (Kla) KLLA0D12232g GI:50307257
Eremothecium gossypii (Ego) AGOS_AFR455W GI:45198973


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0016514 SWI/SNF complex C
IDA
SceS000005937
IMP
SceS000005937
GO:0016251 general RNA polymerase II transcription factor
activity
F
TAS
SceS000005937
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IMP
SceS000005937
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005937
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000005937
GO:0045893 positive regulation of transcription,
DNA-dependent
P
IDA
SceS000005937
GO:0045941 positive regulation of transcription P
RCA
SceS000005937

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_15182

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago3647 AFR455W
Candida glabrata (Cgl) cgl3409 CAGL0J09548g
Debaryomyces hansenii (Dha) dha4828 DEHA0F10043g
Kluyveromyces lactis (Kla) kla2606 KLLA0D12232g
Neurospora crassa (Ncr) ncr5727 NCU05891.2
Saccharomyces cerevisiae (Sce) sce6170 YPL016W
(S000005937)
Schizosaccharomyces pombe (Spo) spo3906 SPBC30B4.04c O74365
Yarrowia lipolytica (Yli) yli4929 YALI0E25960g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC30B4.04c
GO:0005634 nucleus C
IDA
SpoSPBC30B4.04c
GO:0005816 spindle pole body C
IDA
SpoSPBC30B4.04c
GO:0016514 SWI/SNF complex C
IDA
SceS000005937
SpoSPBC30B4.04c
IMP
SceS000005937
GO:0003677 DNA binding F
ISS
SpoSPBC30B4.04c
GO:0016251 general RNA polymerase II transcription factor
activity
F
ISS
SpoSPBC30B4.04c
TAS
SceS000005937
GO:0006338 chromatin remodeling P
ISS
SpoSPBC30B4.04c
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IDA
SpoSPBC30B4.04c
IMP
SceS000005937
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005937
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000005937
GO:0045893 positive regulation of transcription,
DNA-dependent
P
IDA
SceS000005937
GO:0045941 positive regulation of transcription P
RCA
SceS000005937

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC30B4.04c
(O74365)
YPL016W
(S000005937)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000790 nuclear chromatin C
IC
SpoSPBC30B4.04c
GO:0005634 nucleus C
IDA
SpoSPBC30B4.04c
GO:0005816 spindle pole body C
IDA
SpoSPBC30B4.04c
GO:0016514 SWI/SNF complex C
IDA
SceS000005937
SpoSPBC30B4.04c
IMP
SceS000005937
GO:0003677 DNA binding F
ISS
SpoSPBC30B4.04c
GO:0016251 general RNA polymerase II transcription factor
activity
F
ISS
SpoSPBC30B4.04c
TAS
SceS000005937
GO:0006338 chromatin remodeling P
ISS
SpoSPBC30B4.04c
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IDA
SpoSPBC30B4.04c
IMP
SceS000005937
GO:0006984 ER-nucleus signaling pathway P
RCA
SceS000005937
GO:0043044 ATP-dependent chromatin remodeling P
IDA
SceS000005937
GO:0045893 positive regulation of transcription,
DNA-dependent
P
IDA
SceS000005937
GO:0045941 positive regulation of transcription P
RCA
SceS000005937

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk