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Search term: YPL029W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SUV3
SGD link S000005950
Alternative ID YPL029W
Description ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs
Synonyms YPL029W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0953 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Mitochondrial RNA helicase SUV3, DEAD-box superfamily

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g14790 GI:15233577
Arabidopsis thaliana (Ath) At5g39840 GI:15242497
Caenorhabditis elegans (Cel) CE19689
(WBGene00007444)		 GI:17538550
Drosophila melanogaster (Dme) 7296874 GI:7296874
Homo sapiens (Hsa) Hs4507315 GI:4507315
Saccharomyces cerevisiae (Sce) YPL029w
(S000005950)		 GI:6325228 P32580
Schizosaccharomyces pombe (Spo) SPAC637.11 GI:19115541 O94445
Arabidopsis thaliana (Ath) At4g14790 GI:15233577
Arabidopsis thaliana (Ath) At5g39840 GI:15242497
Caenorhabditis elegans (Cel) CE19689
(WBGene00007444)		 GI:17538550
Drosophila melanogaster (Dme) 7296874 GI:7296874
Homo sapiens (Hsa) Hs4507315 GI:4507315
Saccharomyces cerevisiae (Sce) YPL029w
(S000005950)		 GI:6325228 P32580
Schizosaccharomyces pombe (Spo) SPAC637.11 GI:19115541 O94445


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
AthAt4g14790
SceS000005950
SpoSPAC637.11
ISS
AthAt5g39840
GO:0005759 mitochondrial matrix C
IDA
SceS000005950
ISS
SpoSPAC637.11
GO:0004004 ATP-dependent RNA helicase activity F
IDA
AthAt4g14790
SceS000005950
ISS
AthAt5g39840
SpoSPAC637.11
GO:0005524 ATP binding F
ISS
SpoSPAC637.11
GO:0000003 reproduction P
IMP
CelWBGene00007444
GO:0000372 Group I intron splicing P
IGI
SceS000005950
GO:0000965 mitochondrial RNA 3'-end processing P
IMP
SpoSPAC637.11
GO:0002119 nematode larval development P
IMP
CelWBGene00007444
GO:0006401 RNA catabolic process P
IDA
SceS000005950
IMP
SceS000005950
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007444
GO:0007005 mitochondrion organization P
NAS
SpoSPAC637.11
GO:0008150 biological_process P
ND
AthAt5g39840
GO:0009555 pollen development P
IMP
AthAt4g14790
GO:0009561 megagametogenesis P
IMP
AthAt4g14790
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007444
GO:0016070 RNA metabolic process P
IDA
AthAt4g14790
GO:0040007 growth P
IMP
CelWBGene00007444
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007444

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
116874

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) suv3 GI:19115541
Saccharomyces cerevisiae (Sce) SUV3
(S000005950)		 GI:6325228 P32580
Kluyveromyces lactis (Kla) KLLA0D12034g GI:50307239
Eremothecium gossypii (Ego) AGOS_AGL240W GI:45200857
Magnaporthe grisea (Mgr) MGG_01682 GI:39952079
Neurospora crassa (Ncr) NCU06371.1 GI:32411491
Arabidopsis thaliana (Ath) ATSUV3 GI:30682998
Oryza sativa (Osa) Os03g0746500 GI:115455299


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
AthATSUV3
SceS000005950
GO:0005759 mitochondrial matrix C
IDA
SceS000005950
GO:0004004 ATP-dependent RNA helicase activity F
IDA
AthATSUV3
SceS000005950
GO:0000372 Group I intron splicing P
IGI
SceS000005950
GO:0006401 RNA catabolic process P
IDA
SceS000005950
IMP
SceS000005950
GO:0009555 pollen development P
IMP
AthATSUV3
GO:0009561 megagametogenesis P
IMP
AthATSUV3
GO:0016070 RNA metabolic process P
IDA
AthATSUV3

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2019

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5936 ENSANGP00000003866
Ashbya gossypii (Ago) ago4072 AGL240W
Arabidopsis thaliana (Ath) ath19274 At4g14790.1
Arabidopsis thaliana (Ath) ath25755 At5g39840.1
Caenorhabditis elegans (Cel) cel1545 C08F8.2
(CE19689;
WBGene00007444)
Candida glabrata (Cgl) cgl4615 CAGL0L12386g
Cryptococcus neoformans (Cne) cne453 163.m06413
Dictyostelium discoideum (Ddi) ddi6590 DDB0218122
Debaryomyces hansenii (Dha) dha4806 DEHA0F09515g
Drosophila melanogaster (Dme) dme10839 CG9791-PA
(FBgn0037232)
Danio rerio (Dre) dre28999 ENSDARP00000024224
Takifugu rubripes (Fru) fru4300 SINFRUP00000130242
Takifugu rubripes (Fru) fru4301 SINFRUP00000177312
Gallus gallus (Gga) gga20345 ENSGALP00000006668
(SUPV3L1)
Gallus gallus (Gga) gga20346 ENSGALP00000006669
Homo sapiens (Hsa) hsa4014 ENSP00000343179
Homo sapiens (Hsa) hsa4015 ENSP00000352678
(SUPV3L1)		 Q8IYB8
Kluyveromyces lactis (Kla) kla2597 KLLA0D12034g
Mus musculus (Mmu) mmu2242 ENSMUSP00000020273
(MGI:2441711)		 Q80YD1
Neurospora crassa (Ncr) ncr6190 NCU06371.2
Oryza sativa (Osa) osa1302 1477.m00145
Oryza sativa (Osa) osa45555 5500.m00240
Oryza sativa (Osa) osa83315 8245.m00152
Plasmodium falciparum (Pfa) pfa2967 PFF1140c
Rattus norvegicus (Rno) rno17907 ENSRNOP00000000441
(RGD:1305565)		 Q5EBA1
Saccharomyces cerevisiae (Sce) sce6183 YPL029W
(S000005950)
Schizosaccharomyces pombe (Spo) spo1488 SPAC637.11 O94445
Yarrowia lipolytica (Yli) yli5983 YALI0F15147g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
AthAt4g14790
MmuMGI:2441711
SceS000005950
SpoSPAC637.11
ISS
AthAt5g39840
GO:0005759 mitochondrial matrix C
IDA
SceS000005950
ISS
SpoSPAC637.11
GO:0004004 ATP-dependent RNA helicase activity F
IDA
AthAt4g14790
SceS000005950
ISS
AthAt5g39840
DmeFBgn0037232
PfaPFF1140c
SpoSPAC637.11
GO:0005524 ATP binding F
ISS
SpoSPAC637.11
GO:0000003 reproduction P
IMP
CelWBGene00007444
GO:0000372 Group I intron splicing P
IGI
SceS000005950
GO:0000965 mitochondrial RNA 3'-end processing P
IMP
SpoSPAC637.11
GO:0002119 nematode larval development P
IMP
CelWBGene00007444
GO:0006401 RNA catabolic process P
IDA
SceS000005950
IMP
SceS000005950
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007444
GO:0007005 mitochondrion organization P
NAS
SpoSPAC637.11
GO:0008150 biological_process P
ND
AthAt5g39840
GO:0009555 pollen development P
IMP
AthAt4g14790
GO:0009561 megagametogenesis P
IMP
AthAt4g14790
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007444
GO:0016070 RNA metabolic process P
IDA
AthAt4g14790
ISS
PfaPFF1140c
GO:0040007 growth P
IMP
CelWBGene00007444
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007444

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC637.11
(O94445)		 YPL029W
(S000005950)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
SceS000005950
SpoSPAC637.11
GO:0005759 mitochondrial matrix C
IDA
SceS000005950
ISS
SpoSPAC637.11
GO:0004004 ATP-dependent RNA helicase activity F
IDA
SceS000005950
ISS
SpoSPAC637.11
GO:0005524 ATP binding F
ISS
SpoSPAC637.11
GO:0000372 Group I intron splicing P
IGI
SceS000005950
GO:0000965 mitochondrial RNA 3'-end processing P
IMP
SpoSPAC637.11
GO:0006401 RNA catabolic process P
IDA
SceS000005950
IMP
SceS000005950
GO:0007005 mitochondrion organization P
NAS
SpoSPAC637.11

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GO info in one table:

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