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Search term: YPL046C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ELC1
SGD link S000005967
Alternative ID YPL046C
Description Elongin C, involved in transcription elongation as a heterodimer with Ela1p; required for ubiquitin-dependent degradation of Rpo21p; plays a role in global genomic nucleotide excision repair; expression highly upregulated during sporulation
Synonyms YPL046C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3473 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g59140 GI:15237823
Caenorhabditis elegans (Cel) CE07568
(WBGene00001237)		 GI:17570235 Q23153
Caenorhabditis elegans (Cel) CE27039
(WBGene00001236)		 GI:17556632 Q9BKS1
Drosophila melanogaster (Dme) 7302473
(FBgn0023211)		 GI:17647383
Homo sapiens (Hsa) Hs5032161
(TCEB1)		 GI:5032161 Q15369
Homo sapiens (Hsa) Hs17433778_1 GI:17433778
Homo sapiens (Hsa) Hs18547827 GI:18547827
Homo sapiens (Hsa) Hs18576145 GI:18576145
Saccharomyces cerevisiae (Sce) YPL046c
(S000005967)		 GI:6325211 Q03071
Schizosaccharomyces pombe (Spo) SPBC1861.07 GI:19113516 Q9USX9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000005967
GO:0005575 cellular_component C
ND
AthAt5g59140
GO:0005634 nucleus C
IDA
SpoSPBC1861.07
GO:0005654 nucleoplasm C
EXP
HsaTCEB1
GO:0005829 cytosol C
EXP
HsaTCEB1
IDA
SpoSPBC1861.07
GO:0008023 transcription elongation factor
complex		 C
ISS
DmeFBgn0023211
SceS000005967
SpoSPBC1861.07
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000005967
IMP
SceS000005967
GO:0003711 transcription elongation regulator
activity		 F
ISS
DmeFBgn0023211
SceS000005967
SpoSPBC1861.07
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000005967
GO:0005515 protein binding F
IPI
HsaTCEB1
GO:0000003 reproduction P
IMP
CelWBGene00001236
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IMP
SceS000005967
GO:0002119 nematode larval development P
IMP
CelWBGene00001236
GO:0006357 regulation of transcription from RNA polymerase II
promoter		 P
TAS
HsaTCEB1
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
ISS
SceS000005967
SpoSPBC1861.07
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00001236
GO:0007138 meiotic anaphase II P
IMP
CelWBGene00001236
GO:0008595 anterior/posterior axis specification,
embryo		 P
IMP
CelWBGene00001236
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00001236
GO:0016567 protein ubiquitination P
ISS
SpoSPBC1861.07
GO:0032784 regulation of RNA elongation P
ISS
SpoSPBC1861.07
GO:0040007 growth P
IMP
CelWBGene00001236
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000005967
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0023211
GO:0051759 sister chromosome movement towards spindle pole
involved in meiotic sister chromatid
segregation		 P
IMP
CelWBGene00001236

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3056

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga8649 ENSANGP00000015970
Ashbya gossypii (Ago) ago4059 AGL253C
Arabidopsis thaliana (Ath) ath27976 At5g59140.1
Caenorhabditis elegans (Cel) cel20984 Y82E9BR.15
(CE27039;
WBGene00001236)
Candida glabrata (Cgl) cgl4629 CAGL0L12716g
Cryptococcus neoformans (Cne) cne2021 181.m08002
Dictyostelium discoideum (Ddi) ddi8358 DDB0185890
Debaryomyces hansenii (Dha) dha2938 DEHA0D14322g
Drosophila melanogaster (Dme) dme6048 CG9291-PA
(FBgn0023211)
Drosophila melanogaster (Dme) dme6049 CG9291-PB
(FBgn0023211)
Danio rerio (Dre) dre11268 ENSDARP00000004571
Danio rerio (Dre) dre8354 ENSDARP00000034368
Gallus gallus (Gga) gga11247 ENSGALP00000025184
(TCEB1)		 Q5ZJT7
Homo sapiens (Hsa) hsa30428 ENSP00000284811
(TCEB1)		 Q15369
Homo sapiens (Hsa) hsa30427 ENSP00000314472
Kluyveromyces lactis (Kla) kla2583 KLLA0D11726g
Mus musculus (Mmu) mmu76 ENSMUSP00000041591
Neurospora crassa (Ncr) ncr3301 NCU03406.2
Oryza sativa (Osa) osa42209 5276.m00130
Rattus norvegicus (Rno) rno22572 ENSRNOP00000000132
(RGD:620658)		 P83941
Rattus norvegicus (Rno) rno12291 ENSRNOP00000048397
Rattus norvegicus (Rno) rno17838 ENSRNOP00000048517
Saccharomyces cerevisiae (Sce) sce6201 YPL046C
(S000005967)
Schizosaccharomyces pombe (Spo) spo1542 SPBC1861.07 Q9USX9
Yarrowia lipolytica (Yli) yli130 YALI0A03575g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000005967
GO:0005575 cellular_component C
ND
AthAt5g59140
GO:0005634 nucleus C
IDA
SpoSPBC1861.07
GO:0005829 cytosol C
IDA
SpoSPBC1861.07
GO:0008023 transcription elongation factor
complex		 C
ISS
DmeFBgn0023211
SceS000005967
SpoSPBC1861.07
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000005967
IMP
SceS000005967
GO:0003711 transcription elongation regulator
activity		 F
ISS
DmeFBgn0023211
SceS000005967
SpoSPBC1861.07
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000005967
GO:0000003 reproduction P
IMP
CelWBGene00001236
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IMP
SceS000005967
GO:0002119 nematode larval development P
IMP
CelWBGene00001236
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
ISS
SceS000005967
SpoSPBC1861.07
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00001236
GO:0007138 meiotic anaphase II P
IMP
CelWBGene00001236
GO:0008595 anterior/posterior axis specification,
embryo		 P
IMP
CelWBGene00001236
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00001236
GO:0016567 protein ubiquitination P
ISS
SpoSPBC1861.07
GO:0032784 regulation of RNA elongation P
ISS
SpoSPBC1861.07
GO:0040007 growth P
IMP
CelWBGene00001236
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000005967
GO:0048813 dendrite morphogenesis P
IMP
DmeFBgn0023211
GO:0051759 sister chromosome movement towards spindle pole
involved in meiotic sister chromatid
segregation		 P
IMP
CelWBGene00001236

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1861.07
(Q9USX9)		 YPL046C
(S000005967)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000113 nucleotide-excision repair factor 4
complex		 C
IDA
SceS000005967
GO:0005634 nucleus C
IDA
SpoSPBC1861.07
GO:0005829 cytosol C
IDA
SpoSPBC1861.07
GO:0008023 transcription elongation factor
complex		 C
ISS
SceS000005967
SpoSPBC1861.07
GO:0031463 Cul3-RING ubiquitin ligase complex C
IDA
SceS000005967
IMP
SceS000005967
GO:0003711 transcription elongation regulator
activity		 F
ISS
SceS000005967
SpoSPBC1861.07
GO:0004842 ubiquitin-protein ligase activity F
IDA
SceS000005967
GO:0000715 nucleotide-excision repair, DNA damage
recognition		 P
IMP
SceS000005967
GO:0006368 RNA elongation from RNA polymerase II
promoter		 P
ISS
SceS000005967
SpoSPBC1861.07
GO:0016567 protein ubiquitination P
ISS
SpoSPBC1861.07
GO:0032784 regulation of RNA elongation P
ISS
SpoSPBC1861.07
GO:0042787 protein ubiquitination involved in
ubiquitin-dependent protein catabolic
process		 P
IMP
SceS000005967

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GO info in one table:

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