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Search term: YPL083C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SEN54
SGD link S000006004
Alternative ID YPL083C
Description Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p
Synonyms YPL083C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4772 A-D-YP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Predicted tRNA-splicing endonuclease subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g02370 GI:15232889
Arabidopsis thaliana (Ath) At3g57360 GI:15230281
Drosophila melanogaster (Dme) 7294602 GI:7294602
Saccharomyces cerevisiae (Sce) YPL083c
(S000006004)		 GI:6325174 Q02825
Schizosaccharomyces pombe (Spo) SPCC613.09 GI:19075197 O74908


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0005575 cellular_component C
ND
AthAt3g02370
At3g57360
GO:0005739 mitochondrion C
IDA
SceS000006004
GO:0005741 mitochondrial outer membrane C
IDA
SceS000006004
IMP
SceS000006004
ISS
SpoSPCC613.09
GO:0031966 mitochondrial membrane C
IDA
SpoSPCC613.09
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0003674 molecular_function F
ND
AthAt3g57360
At3g02370
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0006415 translational termination P
RCA
SceS000006004
GO:0008150 biological_process P
ND
AthAt3g57360
At3g02370

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40459

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) sen54
(SPCC613.09)		 GI:19075197 O74908
Saccharomyces cerevisiae (Sce) SEN54
(S000006004)		 GI:6325174 Q02825
Kluyveromyces lactis (Kla) KLLA0E23892g GI:50310025
Eremothecium gossypii (Ego) AGOS_AGR205C GI:45201301


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0005739 mitochondrion C
IDA
SceS000006004
GO:0005741 mitochondrial outer membrane C
IDA
SceS000006004
IMP
SceS000006004
ISS
SpoSPCC613.09
GO:0031966 mitochondrial membrane C
IDA
SpoSPCC613.09
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0006415 translational termination P
RCA
SceS000006004

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3806

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga2064 ENSANGP00000011445
Ashbya gossypii (Ago) ago4516 AGR205C
Arabidopsis thaliana (Ath) ath12252 At3g02370.1
Arabidopsis thaliana (Ath) ath17134 At3g57360.1
Candida glabrata (Cgl) cgl2304 CAGL0H05555g
Cryptococcus neoformans (Cne) cne3475 176.m02198
Debaryomyces hansenii (Dha) dha1197 DEHA0B11990g
Drosophila melanogaster (Dme) dme9217 CG5626-PA
(FBgn0036266)
Takifugu rubripes (Fru) fru25316 SINFRUP00000129468
Takifugu rubripes (Fru) fru25315 SINFRUP00000168114
Gallus gallus (Gga) gga16591 ENSGALP00000013033
(TSEN54)
Gallus gallus (Gga) gga16592 ENSGALP00000013034
(TSEN54)
Homo sapiens (Hsa) hsa14336 ENSP00000327487
(TSEN54)		 Q7Z6J9-1
Kluyveromyces lactis (Kla) kla4025 KLLA0E23892g
Mus musculus (Mmu) mmu5153 ENSMUSP00000021134
(MGI:1923515)		 Q8C2A2-1
Mus musculus (Mmu) mmu5154 ENSMUSP00000077835
Neurospora crassa (Ncr) ncr8292 NCU08510.2
Oryza sativa (Osa) osa21432 3601.m00261
Rattus norvegicus (Rno) rno6441 ENSRNOP00000006327
(RGD:1597379)
Rattus norvegicus (Rno) rno6442 ENSRNOP00000006394
(RGD:1597379)
Saccharomyces cerevisiae (Sce) sce6239 YPL083C
(S000006004)
Schizosaccharomyces pombe (Spo) spo1821 SPCC613.09 O74908
Yarrowia lipolytica (Yli) yli606 YALI0A18293g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0005575 cellular_component C
ND
AthAt3g02370
At3g57360
MmuMGI:1923515
GO:0005739 mitochondrion C
IDA
SceS000006004
GO:0005741 mitochondrial outer membrane C
IDA
SceS000006004
IMP
SceS000006004
ISS
SpoSPCC613.09
GO:0031966 mitochondrial membrane C
IDA
SpoSPCC613.09
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0003674 molecular_function F
ND
AthAt3g57360
At3g02370
MmuMGI:1923515
GO:0004017 adenylate kinase activity F
ISS
DmeFBgn0036266
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0006415 translational termination P
RCA
SceS000006004
GO:0008150 biological_process P
ND
AthAt3g57360
At3g02370
MmuMGI:1923515

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC613.09
(O74908)		 YPL083C
(S000006004)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0005739 mitochondrion C
IDA
SceS000006004
GO:0005741 mitochondrial outer membrane C
IDA
SceS000006004
IMP
SceS000006004
ISS
SpoSPCC613.09
GO:0031966 mitochondrial membrane C
IDA
SpoSPCC613.09
GO:0000213 tRNA-intron endonuclease activity F
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0000379 tRNA-type intron splice site recognition and
cleavage		 P
IDA
SceS000006004
ISS
SpoSPCC613.09
GO:0006415 translational termination P
RCA
SceS000006004

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GO info in one table:

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