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Search term: YPL104W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name MSD1
SGD link S000006025
Alternative ID YPL104W
Description Mitochondrial aspartyl-tRNA synthetase, required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene
Synonyms YPL104W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2411 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Aspartyl-tRNA synthetase, mitochondrial

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g33760 GI:15235084
Caenorhabditis elegans (Cel) CE20663 GI:17559492
Drosophila melanogaster (Dme) 7298349 GI:7298349
Homo sapiens (Hsa) Hs8922483 GI:8922483
Saccharomyces cerevisiae (Sce) YPL104w
(S000006025)
GI:6325153 P15179
Schizosaccharomyces pombe (Spo) SPCC736.06 GI:19075277 O94242


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
ISS
AthAt4g33760
GO:0005739 mitochondrion C
IDA
AthAt4g33760
SceS000006025
SpoSPCC736.06
IMP
SceS000006025
ISS
SceS000006025
SpoSPCC736.06
GO:0009507 chloroplast C
IDA
AthAt4g33760
GO:0016020 membrane C
IDA
AthAt4g33760
GO:0000049 tRNA binding F
IC
SpoSPCC736.06
GO:0004812 aminoacyl-tRNA ligase activity F
ISS
AthAt4g33760
GO:0004815 aspartate-tRNA ligase activity F
IMP
SceS000006025
ISA
SceS000006025
ISS
SpoSPCC736.06
GO:0005524 ATP binding F
ISS
AthAt4g33760
SpoSPCC736.06
GO:0006418 tRNA aminoacylation for protein
translation
P
ISS
AthAt4g33760
GO:0006422 aspartyl-tRNA aminoacylation P
ISS
SpoSPCC736.06
GO:0032543 mitochondrial translation P
NAS
SpoSPCC736.06
GO:0070146 mitochondrial aspartyl-tRNA aminoacylation P
IGI
SceS000006025
IMP
SceS000006025

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
7093

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) DARS2 GI:40789249
Pan troglodytes (Ptr) DARS2 GI:114565506
Canis familiaris (Cfa) DARS2 GI:73961347
Mus musculus (Mmu) Dars2
(MGI:2442510)
GI:27369928 Q811F8
Rattus norvegicus (Rno) Dars2
(RGD:1308286)
GI:77627987
Drosophila melanogaster (Dme) CG31739
(FBgn0051739)
GI:24584738
Anopheles gambiae (Aga) AgaP_AGAP007844 GI:158297420
Caenorhabditis elegans (Cel) drs-2
(CE31906;
WBGene00001095)
GI:32566633
Schizosaccharomyces pombe (Spo) SPCC736.06 GI:19075277 O94242
Saccharomyces cerevisiae (Sce) MSD1
(S000006025)
GI:6325153 P15179
Kluyveromyces lactis (Kla) KLLA0E24486g GI:50310079
Eremothecium gossypii (Ego) AGOS_AGR206C GI:45201302
Magnaporthe grisea (Mgr) MGG_13512 GI:145616054
Neurospora crassa (Ncr) NCU02585.1 GI:32422681
Arabidopsis thaliana (Ath) AT4G33760 GI:30689804
Oryza sativa (Osa) Os01g0153400 GI:115434592


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
ISS
AthAt4g33760
GO:0005739 mitochondrion C
IDA
AthAt4g33760
MmuMGI:2442510
SceS000006025
SpoSPCC736.06
IMP
SceS000006025
ISS
SceS000006025
SpoSPCC736.06
GO:0009507 chloroplast C
IDA
AthAt4g33760
GO:0016020 membrane C
IDA
AthAt4g33760
GO:0000049 tRNA binding F
IC
SpoSPCC736.06
GO:0003674 molecular_function F
ND
MmuMGI:2442510
GO:0004812 aminoacyl-tRNA ligase activity F
ISS
AthAt4g33760
GO:0004815 aspartate-tRNA ligase activity F
IMP
SceS000006025
ISA
SceS000006025
ISS
DmeFBgn0051739
SpoSPCC736.06
GO:0005524 ATP binding F
ISS
AthAt4g33760
SpoSPCC736.06
GO:0000003 reproduction P
IMP
CelWBGene00001095
GO:0002119 nematode larval development P
IMP
CelWBGene00001095
GO:0006418 tRNA aminoacylation for protein
translation
P
ISS
AthAt4g33760
GO:0006422 aspartyl-tRNA aminoacylation P
ISS
DmeFBgn0051739
SpoSPCC736.06
GO:0008150 biological_process P
ND
MmuMGI:2442510
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00001095
GO:0032543 mitochondrial translation P
NAS
SpoSPCC736.06
GO:0040007 growth P
IMP
CelWBGene00001095
GO:0070146 mitochondrial aspartyl-tRNA aminoacylation P
IGI
SceS000006025
IMP
SceS000006025

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_870

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga9766 ENSANGP00000018448
Ashbya gossypii (Ago) ago4517 AGR206C
Arabidopsis thaliana (Ath) ath21497 At4g33760.1
Caenorhabditis elegans (Cel) cel5886 F10C2.6
(CE31906;
WBGene00001095)
Candida glabrata (Cgl) cgl2320 CAGL0H05907g
Cryptococcus neoformans (Cne) cne3636 176.m02370
Dictyostelium discoideum (Ddi) ddi11870 DDB0231311
Debaryomyces hansenii (Dha) dha3096 DEHA0D17743g
Drosophila melanogaster (Dme) dme2699 CG31739-PA
(FBgn0051739)
Danio rerio (Dre) dre31875 ENSDARP00000002090
Danio rerio (Dre) dre31874 ENSDARP00000004891
Danio rerio (Dre) dre31877 ENSDARP00000019854
Danio rerio (Dre) dre31873 ENSDARP00000040294
Danio rerio (Dre) dre31876 ENSDARP00000044383
Escherichia coli (Eco) eco1822 16129819
Takifugu rubripes (Fru) fru28145 SINFRUP00000154508
Gallus gallus (Gga) gga24697 ENSGALP00000000801
Gallus gallus (Gga) gga24698 ENSGALP00000000802
Gallus gallus (Gga) gga22265 ENSGALP00000005711
(DARS2)
Gallus gallus (Gga) gga22266 ENSGALP00000005712
Gallus gallus (Gga) gga22268 ENSGALP00000005713
Gallus gallus (Gga) gga22267 ENSGALP00000005714
Gallus gallus (Gga) gga22270 ENSGALP00000005715
Gallus gallus (Gga) gga22269 ENSGALP00000005716
Gallus gallus (Gga) gga22271 ENSGALP00000005717
Homo sapiens (Hsa) hsa2631 ENSP00000354704
Homo sapiens (Hsa) hsa2632 ENSP00000355086
(DARS2)
Q6PI48
Kluyveromyces lactis (Kla) kla4052 KLLA0E24486g
Mus musculus (Mmu) mmu1326 ENSMUSP00000041851
(MGI:2442510)
Q8BIP0
Neurospora crassa (Ncr) ncr2503 NCU02585.2
Oryza sativa (Osa) osa10747 2783.m00196
Rattus norvegicus (Rno) rno9359 ENSRNOP00000003828
(RGD:1308286)
Q3KRD0
Saccharomyces cerevisiae (Sce) sce6261 YPL104W
(S000006025)
Schizosaccharomyces pombe (Spo) spo3949 SPCC736.06 O94242
Yarrowia lipolytica (Yli) yli6448 YALI0F26433g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
ISS
AthAt4g33760
GO:0005739 mitochondrion C
IDA
AthAt4g33760
MmuMGI:2442510
SceS000006025
SpoSPCC736.06
IMP
SceS000006025
ISS
SceS000006025
SpoSPCC736.06
GO:0009507 chloroplast C
IDA
AthAt4g33760
GO:0016020 membrane C
IDA
AthAt4g33760
GO:0000049 tRNA binding F
IC
SpoSPCC736.06
GO:0003674 molecular_function F
ND
MmuMGI:2442510
GO:0004812 aminoacyl-tRNA ligase activity F
ISS
AthAt4g33760
GO:0004815 aspartate-tRNA ligase activity F
IMP
SceS000006025
ISA
SceS000006025
ISS
DmeFBgn0051739
SpoSPCC736.06
GO:0005524 ATP binding F
ISS
AthAt4g33760
SpoSPCC736.06
GO:0000003 reproduction P
IMP
CelWBGene00001095
GO:0002119 nematode larval development P
IMP
CelWBGene00001095
GO:0006418 tRNA aminoacylation for protein
translation
P
ISS
AthAt4g33760
GO:0006422 aspartyl-tRNA aminoacylation P
ISS
DmeFBgn0051739
SpoSPCC736.06
GO:0008150 biological_process P
ND
MmuMGI:2442510
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00001095
GO:0032543 mitochondrial translation P
NAS
SpoSPCC736.06
GO:0040007 growth P
IMP
CelWBGene00001095
GO:0070146 mitochondrial aspartyl-tRNA aminoacylation P
IGI
SceS000006025
IMP
SceS000006025

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPCC736.06
(O94242)
YPL104W
(S000006025)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005739 mitochondrion C
IDA
SceS000006025
SpoSPCC736.06
IMP
SceS000006025
ISS
SceS000006025
SpoSPCC736.06
GO:0000049 tRNA binding F
IC
SpoSPCC736.06
GO:0004815 aspartate-tRNA ligase activity F
IMP
SceS000006025
ISA
SceS000006025
ISS
SpoSPCC736.06
GO:0005524 ATP binding F
ISS
SpoSPCC736.06
GO:0006422 aspartyl-tRNA aminoacylation P
ISS
SpoSPCC736.06
GO:0032543 mitochondrial translation P
NAS
SpoSPCC736.06
GO:0070146 mitochondrial aspartyl-tRNA aminoacylation P
IGI
SceS000006025
IMP
SceS000006025

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Query species:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk