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Search term: YPL178W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name CBC2
SGD link S000006099
Alternative ID YPL178W
Description Small subunit of the heterodimeric cap binding complex that also contains Sto1p, component of the spliceosomal commitment complex; interacts with Npl3p, possibly to package mRNA for export from the nucleus; contains an RNA-binding motif
Synonyms YPL178W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0121 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g44200 GI:15241430
Caenorhabditis elegans (Cel) CE09667
(WBGene00009141)
GI:17506843 Q93594
Drosophila melanogaster (Dme) 7300337
(FBgn0022943)
GI:17738031
Homo sapiens (Hsa) Hs19923387
(NCBP2)
GI:19923387 P52298
Saccharomyces cerevisiae (Sce) YPL178w
(S000006099)
GI:6325079 Q08920
Schizosaccharomyces pombe (Spo) SPBC13A2.01c GI:19113206 Q9P383
Encephalitozoon cuniculi (Ecu) ECU03g0760 GI:19173034 Q8SW46
Arabidopsis thaliana (Ath) At5g44200 GI:15241430
Caenorhabditis elegans (Cel) CE09667
(WBGene00009141)
GI:17506843 Q93594
Drosophila melanogaster (Dme) 7300337
(FBgn0022943)
GI:17738031
Homo sapiens (Hsa) Hs19923387
(NCBP2)
GI:19923387 P52298
Saccharomyces cerevisiae (Sce) YPL178w
(S000006099)
GI:6325079 Q08920
Schizosaccharomyces pombe (Spo) SPBC13A2.01c GI:19113206 Q9P383
Encephalitozoon cuniculi (Ecu) ECU03g0760 GI:19173034 Q8SW46
Arabidopsis thaliana (Ath) At5g44200 GI:15241430
Caenorhabditis elegans (Cel) CE09667
(WBGene00009141)
GI:17506843 Q93594
Drosophila melanogaster (Dme) 7300337
(FBgn0022943)
GI:17738031
Homo sapiens (Hsa) Hs19923387
(NCBP2)
GI:19923387 P52298
Saccharomyces cerevisiae (Sce) YPL178w
(S000006099)
GI:6325079 Q08920
Schizosaccharomyces pombe (Spo) SPBC13A2.01c GI:19113206 Q9P383
Encephalitozoon cuniculi (Ecu) ECU03g0760 GI:19173034 Q8SW46


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IDA
SceS000006099
ISS
SpoSPBC13A2.01c
GO:0005634 nucleus C
IDA
HsaNCBP2
SpoSPBC13A2.01c
ISS
DmeFBgn0022943
NAS
HsaNCBP2
GO:0005635 nuclear envelope C
IDA
CelWBGene00009141
GO:0005654 nucleoplasm C
EXP
HsaNCBP2
IDA
HsaNCBP2
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0022943
GO:0005737 cytoplasm C
IDA
HsaNCBP2
GO:0005819 spindle C
IDA
SpoSPBC13A2.01c
GO:0005829 cytosol C
EXP
HsaNCBP2
IDA
SpoSPBC13A2.01c
GO:0005845 mRNA cap binding complex C
IDA
HsaNCBP2
TAS
AthAt5g44200
GO:0005846 nuclear cap binding complex C
IDA
SceS000006099
ISS
DmeFBgn0022943
SpoSPBC13A2.01c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0022943
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0022943
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0022943
GO:0000339 RNA cap binding F
IDA
AthAt5g44200
SceS000006099
ISS
DmeFBgn0022943
SceS000006099
SpoSPBC13A2.01c
NAS
HsaNCBP2
GO:0000340 RNA 7-methylguanosine cap binding F
IDA
HsaNCBP2
GO:0003723 RNA binding F
ISS
AthAt5g44200
GO:0003729 mRNA binding F
ISS
DmeFBgn0022943
RCA
SceS000006099
GO:0005515 protein binding F
IPI
HsaNCBP2
GO:0000003 reproduction P
IMP
CelWBGene00009141
GO:0000184 nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay
P
IDA
HsaNCBP2
IMP
HsaNCBP2
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaNCBP2
GO:0000394 RNA splicing, via endonucleolytic cleavage and
ligation
P
IMP
AthAt5g44200
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0022943
IMP
SceS000006099
ISS
DmeFBgn0022943
SpoSPBC13A2.01c
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00009141
GO:0002119 nematode larval development P
IMP
CelWBGene00009141
GO:0006370 mRNA capping P
IDA
HsaNCBP2
GO:0006408 snRNA export from nucleus P
ISS
HsaNCBP2
NAS
HsaNCBP2
GO:0006446 regulation of translational initiation P
IDA
HsaNCBP2
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009141
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00009141
GO:0008380 RNA splicing P
EXP
HsaNCBP2
ISS
HsaNCBP2
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00009141
GO:0016070 RNA metabolic process P
TAS
AthAt5g44200
GO:0016246 RNA interference P
IMP
CelWBGene00009141
GO:0030422 production of siRNA involved in RNA
interference
P
IMP
DmeFBgn0022943
GO:0031053 primary microRNA processing P
IMP
AthAt5g44200
GO:0035195 gene silencing by miRNA P
IMP
DmeFBgn0022943
GO:0040007 growth P
IMP
CelWBGene00009141
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00009141
GO:0045071 negative regulation of viral genome
replication
P
IMP
DmeFBgn0022943
GO:0046833 positive regulation of RNA export from
nucleus
P
ISS
HsaNCBP2

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
103828

Species Gene ID NCBI link UniProt link
Gallus gallus (Gga) LOC422214 GI:57530195
Drosophila melanogaster (Dme) Cbp20
(FBgn0022943)
GI:17738031
Anopheles gambiae (Aga) AgaP_AGAP002547 GI:118782613
Caenorhabditis elegans (Cel) ncbp-2
(CE09667;
WBGene00009141)
GI:17506843 Q93594
Schizosaccharomyces pombe (Spo) SPBC13A2.01c GI:19113206 Q9P383
Saccharomyces cerevisiae (Sce) CBC2
(S000006099)
GI:6325079 Q08920
Kluyveromyces lactis (Kla) KLLA0B10472g GI:50304093
Eremothecium gossypii (Ego) AGOS_AFL050W GI:45198469
Magnaporthe grisea (Mgr) MGG_06296 GI:145608886
Neurospora crassa (Ncr) NCU00210.1 GI:32403366


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000243 commitment complex C
IDA
SceS000006099
ISS
SpoSPBC13A2.01c
GO:0005634 nucleus C
IDA
SpoSPBC13A2.01c
ISS
DmeFBgn0022943
GO:0005635 nuclear envelope C
IDA
CelWBGene00009141
GO:0005681 spliceosomal complex C
ISS
DmeFBgn0022943
GO:0005819 spindle C
IDA
SpoSPBC13A2.01c
GO:0005829 cytosol C
IDA
SpoSPBC13A2.01c
GO:0005846 nuclear cap binding complex C
IDA
SceS000006099
ISS
DmeFBgn0022943
SpoSPBC13A2.01c
GO:0005875 microtubule associated complex C
IDA
DmeFBgn0022943
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0022943
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0022943
GO:0000339 RNA cap binding F
IDA
SceS000006099
ISS
DmeFBgn0022943
SceS000006099
SpoSPBC13A2.01c
GO:0003729 mRNA binding F
ISS
DmeFBgn0022943
RCA
SceS000006099
GO:0000003 reproduction P
IMP
CelWBGene00009141
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0022943
IMP
SceS000006099
ISS
DmeFBgn0022943
SpoSPBC13A2.01c
GO:0002009 morphogenesis of an epithelium P
IMP
CelWBGene00009141
GO:0002119 nematode larval development P
IMP
CelWBGene00009141
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00009141
GO:0008340 determination of adult lifespan P
IMP
CelWBGene00009141
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00009141
GO:0016246 RNA interference P
IMP
CelWBGene00009141
GO:0030422 production of siRNA involved in RNA
interference
P
IMP
DmeFBgn0022943
GO:0035195 gene silencing by miRNA P
IMP
DmeFBgn0022943
GO:0040007 growth P
IMP
CelWBGene00009141
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00009141
GO:0045071 negative regulation of viral genome
replication
P
IMP
DmeFBgn0022943

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2533

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga4746 ENSANGP00000012757
Ashbya gossypii (Ago) ago3143 AFL050W
Arabidopsis thaliana (Ath) ath26245 At5g44200.1
Caenorhabditis elegans (Cel) cel7322 F26A3.2
(CE09667;
WBGene00009141)
Candida glabrata (Cgl) cgl481 CAGL0C01529g
Dictyostelium discoideum (Ddi) ddi7749 DDB0218899
Debaryomyces hansenii (Dha) dha2445 DEHA0D03344g
Drosophila melanogaster (Dme) dme13160 CG12357-PA
(FBgn0022943)
Danio rerio (Dre) dre5607 ENSDARP00000020688
(ncbp2)
Q1MT38
Encephalitozoon cuniculi (Ecu) ecu441 19173034
Takifugu rubripes (Fru) fru32671 SINFRUP00000128783
Gallus gallus (Gga) gga16786 ENSGALP00000009225
(LOC422214)
Q5ZKR5
Gallus gallus (Gga) gga23407 ENSGALP00000011061
(NCBP2)
Homo sapiens (Hsa) hsa23703 ENSP00000326806
(NCBP2)
P52298-1
Kluyveromyces lactis (Kla) kla994 KLLA0B10472g
Mus musculus (Mmu) mmu10198 ENSMUSP00000023460
(MGI:1915342)
Q9CQ49
Neurospora crassa (Ncr) ncr203 NCU00210.2
Plasmodium falciparum (Pfa) pfa3273 PFD0750w
Rattus norvegicus (Rno) rno7403 ENSRNOP00000002381
(RGD:1596188)
B1WC40
Saccharomyces cerevisiae (Sce) sce6338 YPL178W
(S000006099)
Schizosaccharomyces pombe (Spo) spo1812 SPBC13A2.01c Q9P383
Yarrowia lipolytica (Yli) yli5071 YALI0E29293g