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Search term: YPL208W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RKM1
SGD link S000006129
Alternative ID YPL208W
Description SET-domain lysine-N-methyltransferase, catalyzes the formation of dimethyllysine residues on the large ribsomal subunit protein L23a (RPL23A and RPL23B)
Synonyms YPL208W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1337 ACDHYP-

KOGs classification KOGs description
POORLY CHARACTERIZED N-methyltransferase

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g01920 GI:15223505
Arabidopsis thaliana (Ath) At1g14030 GI:15223054
Arabidopsis thaliana (Ath) At1g24610 GI:15221780
Arabidopsis thaliana (Ath) At3g07670 GI:15231493
Arabidopsis thaliana (Ath) At3g56570 GI:15228958
Arabidopsis thaliana (Ath) At5g14260 GI:15241353
Arabidopsis thaliana (Ath) At5g17240 GI:15237935
Caenorhabditis elegans (Cel) CE26269 GI:17556426
Drosophila melanogaster (Dme) 7290775 GI:7290775
Drosophila melanogaster (Dme) 7290777 GI:7290777
Drosophila melanogaster (Dme) 7292112 GI:7292112
Homo sapiens (Hsa) Hs8393013
(SETD4)		 GI:8393013 Q9NVD3
Homo sapiens (Hsa) Hs14149938 GI:14149938
Saccharomyces cerevisiae (Sce) YBR030w
(S000000234)		 GI:6319504 P38222
Saccharomyces cerevisiae (Sce) YDR198c
(S000002606)		 GI:6320404 Q03942
Saccharomyces cerevisiae (Sce) YHL039w GI:6321748 P38732
Saccharomyces cerevisiae (Sce) YPL208w
(S000006129)		 GI:6325048 Q08961
Schizosaccharomyces pombe (Spo) SPAC3C7.09 GI:19114522 O14135
Schizosaccharomyces pombe (Spo) SPBC1709.13c GI:19112238 O74738
Schizosaccharomyces pombe (Spo) SPCC1223.04c GI:19075849 O74405


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g56570
At1g01920
SceS000002606
GO:0005634 nucleus C
IDA
SceS000006129
S000000234
SpoSPAC3C7.09
SPBC1709.13c
SPCC1223.04c
GO:0005730 nucleolus C
IDA
SpoSPCC1223.04c
GO:0005737 cytoplasm C
IDA
SceS000006129
GO:0005829 cytosol C
IDA
SpoSPAC3C7.09
SPBC1709.13c
SPCC1223.04c
GO:0009507 chloroplast C
IDA
AthAt1g24610
At5g14260
At1g14030
GO:0009570 chloroplast stroma C
IDA
AthAt1g14030
GO:0003674 molecular_function F
ND
AthAt1g24610
At5g14260
At5g17240
At3g56570
At1g01920
GO:0016279 protein-lysine N-methyltransferase
activity		 F
IDA
SceS000006129
S000002606
SpoSPCC1223.04c
IGI
SceS000000234
IMP
SceS000006129
S000000234
SpoSPBC1709.13c
ISS
SpoSPAC3C7.09
GO:0030785 [ribulose-bisphosphate carboxylase]-lysine
N-methyltransferase activity		 F
ISS
AthAt1g14030
GO:0006479 protein amino acid methylation P
IDA
SpoSPCC1223.04c
IMP
SpoSPBC1709.13c
ISS
SpoSPAC3C7.09
GO:0008150 biological_process P
ND
AthAt1g24610
At3g56570
At5g17240
At5g14260
At3g07670
At1g01920
GO:0018022 peptidyl-lysine methylation P
IDA
SpoSPCC1223.04c
ISS
SpoSPAC3C7.09
GO:0018023 peptidyl-lysine trimethylation P
IMP
SceS000002606
GO:0018026 peptidyl-lysine monomethylation P
IDA
SceS000002606
IGI
SceS000000234
IMP
SceS000000234
GO:0018027 peptidyl-lysine dimethylation P
IDA
SceS000006129
IMP
SceS000006129
ISS
SpoSPBC1709.13c
GO:0042254 ribosome biogenesis P
NAS
SpoSPBC1709.13c
TAS
SpoSPCC1223.04c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40410

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPBC1709.13c GI:19112238 O74738
Saccharomyces cerevisiae (Sce) RKM1
(S000006129)		 GI:6325048 Q08961
Kluyveromyces lactis (Kla) KLLA0B02354g GI:50303389


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000006129
SpoSPBC1709.13c
GO:0005737 cytoplasm C
IDA
SceS000006129
GO:0005829 cytosol C
IDA
SpoSPBC1709.13c
GO:0016279 protein-lysine N-methyltransferase
activity		 F
IDA
SceS000006129
IMP
SceS000006129
SpoSPBC1709.13c
GO:0006479 protein amino acid methylation P
IMP
SpoSPBC1709.13c
GO:0018027 peptidyl-lysine dimethylation P
IDA
SceS000006129
IMP
SceS000006129
ISS
SpoSPBC1709.13c
GO:0042254 ribosome biogenesis P
NAS
SpoSPBC1709.13c

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17625

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Ashbya gossypii (Ago) ago3095 AFL100W
Candida glabrata (Cgl) cgl1189 CAGL0E05698g
Cryptococcus neoformans (Cne) cne5495 179.m00348
Debaryomyces hansenii (Dha) dha127 DEHA0A02871g
Kluyveromyces lactis (Kla) kla634 KLLA0B02354g
Saccharomyces cerevisiae (Sce) sce6370 YPL208W
(S000006129)
Schizosaccharomyces pombe (Spo) spo1996 SPBC1709.13c O74738


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000006129
SpoSPBC1709.13c
GO:0005737 cytoplasm C
IDA
SceS000006129
GO:0005829 cytosol C
IDA
SpoSPBC1709.13c
GO:0016279 protein-lysine N-methyltransferase
activity		 F
IDA
SceS000006129
IMP
SceS000006129
SpoSPBC1709.13c
GO:0006479 protein amino acid methylation P
IMP
SpoSPBC1709.13c
GO:0018027 peptidyl-lysine dimethylation P
IDA
SceS000006129
IMP
SceS000006129
ISS
SpoSPBC1709.13c
GO:0042254 ribosome biogenesis P
NAS
SpoSPBC1709.13c

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC1709.13c
(O74738)		 YPL208W
(S000006129)
SPAC3C7.09
(O14135)		 YPL208W
(S000006129)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000006129
SpoSPAC3C7.09
SPBC1709.13c
GO:0005737 cytoplasm C
IDA
SceS000006129
GO:0005829 cytosol C
IDA
SpoSPAC3C7.09
SPBC1709.13c
GO:0016279 protein-lysine N-methyltransferase
activity		 F
IDA
SceS000006129
IMP
SceS000006129
SpoSPBC1709.13c
ISS
SpoSPAC3C7.09
GO:0006479 protein amino acid methylation P
IMP
SpoSPBC1709.13c
ISS
SpoSPAC3C7.09
GO:0018022 peptidyl-lysine methylation P
ISS
SpoSPAC3C7.09
GO:0018027 peptidyl-lysine dimethylation P
IDA
SceS000006129
IMP
SceS000006129
ISS
SpoSPBC1709.13c
GO:0042254 ribosome biogenesis P
NAS
SpoSPBC1709.13c

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