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Search term: YPR010C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPA135
SGD link S000006214
Alternative ID YPR010C
Description RNA polymerase I subunit A135
Synonyms YPR010C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0216 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase I, second largest subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g29940 GI:18397295
Caenorhabditis elegans (Cel) CE05629
(WBGene00008781)		 GI:17506623 Q27493
Drosophila melanogaster (Dme) 7296211
(FBgn0003278)		 GI:17136446
Homo sapiens (Hsa) Hs9506619 GI:9506619
Homo sapiens (Hsa) Hs14149912 GI:14149912
Saccharomyces cerevisiae (Sce) YPR010c
(S000006214)		 GI:6325267 P22138
Schizosaccharomyces pombe (Spo) SPBP23A10.07 GI:19112611 Q9P7X8
Encephalitozoon cuniculi (Ecu) ECU03g0440 GI:19173004 Q8SSB7
Arabidopsis thaliana (Ath) At1g29940 GI:18397295
Caenorhabditis elegans (Cel) CE05629
(WBGene00008781)		 GI:17506623 Q27493
Drosophila melanogaster (Dme) 7296211
(FBgn0003278)		 GI:17136446
Homo sapiens (Hsa) Hs9506619 GI:9506619
Homo sapiens (Hsa) Hs14149912 GI:14149912
Saccharomyces cerevisiae (Sce) YPR010c
(S000006214)		 GI:6325267 P22138
Schizosaccharomyces pombe (Spo) SPBP23A10.07 GI:19112611 Q9P7X8
Encephalitozoon cuniculi (Ecu) ECU03g0440 GI:19173004 Q8SSB7
Arabidopsis thaliana (Ath) At1g29940 GI:18397295
Caenorhabditis elegans (Cel) CE05629
(WBGene00008781)		 GI:17506623 Q27493
Drosophila melanogaster (Dme) 7296211
(FBgn0003278)		 GI:17136446
Homo sapiens (Hsa) Hs9506619 GI:9506619
Homo sapiens (Hsa) Hs14149912 GI:14149912
Saccharomyces cerevisiae (Sce) YPR010c
(S000006214)		 GI:6325267 P22138
Schizosaccharomyces pombe (Spo) SPBP23A10.07 GI:19112611 Q9P7X8
Encephalitozoon cuniculi (Ecu) ECU03g0440 GI:19173004 Q8SSB7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
NAS
DmeFBgn0003278
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000006214
ISS
DmeFBgn0003278
SpoSPBP23A10.07
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000006214
ISS
AthAt1g29940
DmeFBgn0003278
SpoSPBP23A10.07
GO:0000003 reproduction P
IMP
CelWBGene00008781
GO:0002119 nematode larval development P
IMP
CelWBGene00008781
GO:0006350 transcription P
ISS
AthAt1g29940
GO:0006360 transcription from RNA polymerase I
promoter		 P
ISS
DmeFBgn0003278
SpoSPBP23A10.07
NAS
DmeFBgn0003278
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008781
GO:0040007 growth P
IMP
CelWBGene00008781
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00008781
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000006214

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
7133

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR1B GI:33469941
Pan troglodytes (Ptr) POLR1B GI:114579598
Mus musculus (Mmu) Polr1b
(MGI:108014)		 GI:6677789 P70700
Rattus norvegicus (Rno) Polr1b GI:13929088
Gallus gallus (Gga) POLR1B GI:118087767
Drosophila melanogaster (Dme) RpI135
(FBgn0003278)		 GI:17136446
Anopheles gambiae (Aga) AgaP_AGAP009539 GI:158288277
Caenorhabditis elegans (Cel) F14B4.3
(CE05629;
WBGene00008781)		 GI:17506623 Q27493
Schizosaccharomyces pombe (Spo) rpa2
(SPBP23A10.07)		 GI:19112611 Q9P7X8
Saccharomyces cerevisiae (Sce) RPA135
(S000006214)		 GI:6325267 P22138
Kluyveromyces lactis (Kla) KLLA0B06303g GI:50303741
Eremothecium gossypii (Ego) AGOS_ABR029W GI:45185258
Magnaporthe grisea (Mgr) MGG_01572 GI:145613510
Neurospora crassa (Ncr) NCU08616.1 GI:32418524
Arabidopsis thaliana (Ath) NRPA2 GI:79356046
Oryza sativa (Osa) Os10g0495600 GI:115482718
Plasmodium falciparum (Pfa) PF11_0358 GI:124804526


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
MmuMGI:108014
NAS
DmeFBgn0003278
GO:0005654 nucleoplasm C
EXP
HsaPOLR1B
GO:0005730 nucleolus C
IDA
MmuMGI:108014
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
MmuMGI:108014
SceS000006214
ISO
MmuMGI:108014
ISS
DmeFBgn0003278
PfaPF11_0358
SpoSPBP23A10.07
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000006214
ISO
MmuMGI:108014
ISS
AthNRPA2
DmeFBgn0003278
SpoSPBP23A10.07
GO:0005515 protein binding F
IPI
HsaPOLR1B
MmuMGI:108014
GO:0000003 reproduction P
IMP
CelWBGene00008781
GO:0002119 nematode larval development P
IMP
CelWBGene00008781
GO:0006350 transcription P
ISS
AthNRPA2
GO:0006360 transcription from RNA polymerase I
promoter		 P
ISS
DmeFBgn0003278
PfaPF11_0358
SpoSPBP23A10.07
NAS
DmeFBgn0003278
GO:0007566 embryo implantation P
IMP
MmuMGI:108014
GO:0009303 rRNA transcription P
IMP
MmuMGI:108014
ISO
MmuMGI:108014
GO:0009790 embryo development P
IMP
MmuMGI:108014
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008781
GO:0017126 nucleologenesis P
IMP
MmuMGI:108014
GO:0040007 growth P
IMP
CelWBGene00008781
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00008781
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000006214

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1957

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga11694 ENSANGP00000020031
Ashbya gossypii (Ago) ago620 ABR029W
Arabidopsis thaliana (Ath) ath3126 At1g29940.1
Caenorhabditis elegans (Cel) cel6250 F14B4.3
(CE05629;
WBGene00008781)
Candida glabrata (Cgl) cgl3068 CAGL0J01848g
Cryptococcus neoformans (Cne) cne1254 180.m00193
Dictyostelium discoideum (Ddi) ddi13608 DDB0216278
Debaryomyces hansenii (Dha) dha5473 DEHA0F24343g
Drosophila melanogaster (Dme) dme89 CG4033-PA
(FBgn0003278)
Encephalitozoon cuniculi (Ecu) ecu411 19173004
Takifugu rubripes (Fru) fru32185 SINFRUP00000142122
Takifugu rubripes (Fru) fru32186 SINFRUP00000171129
Takifugu rubripes (Fru) fru32187 SINFRUP00000174723
Gallus gallus (Gga) gga6899 ENSGALP00000014000
Gallus gallus (Gga) gga6901 ENSGALP00000014001
(POLR1B)
Gallus gallus (Gga) gga6900 ENSGALP00000014002
Homo sapiens (Hsa) hsa18447 ENSP00000263331
(POLR1B)		 B7Z823
Homo sapiens (Hsa) hsa18446 ENSP00000334589
(POLR1B)		 C9JXL5
Kluyveromyces lactis (Kla) kla814 KLLA0B06303g
Mus musculus (Mmu) mmu15479 ENSMUSP00000028874
(MGI:108014)		 A2AP84
Neurospora crassa (Ncr) ncr8397 NCU08616.2
Oryza sativa (Osa) osa40737 5192.m00121
Plasmodium falciparum (Pfa) pfa809 PF11_0358
Rattus norvegicus (Rno) rno19694 ENSRNOP00000024882
(RGD:620822)		 O54888
Saccharomyces cerevisiae (Sce) sce6463 YPR010C
(S000006214)
Schizosaccharomyces pombe (Spo) spo3071 SPBP23A10.07 Q9P7X8
Yarrowia lipolytica (Yli) yli4266 YALI0E09845g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
MmuMGI:108014
NAS
DmeFBgn0003278
GO:0005730 nucleolus C
IDA
MmuMGI:108014
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
MmuMGI:108014
SceS000006214
ISO
MmuMGI:108014
ISS
DmeFBgn0003278
PfaPF11_0358
SpoSPBP23A10.07
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000006214
ISO
MmuMGI:108014
ISS
AthAt1g29940
DmeFBgn0003278
SpoSPBP23A10.07
GO:0005515 protein binding F
IPI
MmuMGI:108014
GO:0000003 reproduction P
IMP
CelWBGene00008781
GO:0002119 nematode larval development P
IMP
CelWBGene00008781
GO:0006350 transcription P
ISS
AthAt1g29940
GO:0006360 transcription from RNA polymerase I
promoter		 P
ISS
DmeFBgn0003278
PfaPF11_0358
SpoSPBP23A10.07
NAS
DmeFBgn0003278
GO:0007566 embryo implantation P
IMP
MmuMGI:108014
GO:0009303 rRNA transcription P
IMP
MmuMGI:108014
ISO
MmuMGI:108014
GO:0009790 embryo development P
IMP
MmuMGI:108014
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00008781
GO:0017126 nucleologenesis P
IMP
MmuMGI:108014
GO:0040007 growth P
IMP
CelWBGene00008781
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00008781
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000006214

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBP23A10.07
(Q9P7X8)		 YPR010C
(S000006214)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000006214
ISS
SpoSPBP23A10.07
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SceS000006214
ISS
SpoSPBP23A10.07
GO:0006360 transcription from RNA polymerase I
promoter		 P
ISS
SpoSPBP23A10.07
GO:0042790 transcription of nuclear rRNA large RNA polymerase
I transcript		 P
IGI
SceS000006214

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Search for gene by ID or name:

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Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk