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Search term: YPR072W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NOT5
SGD link S000006276
Alternative ID YPR072W
Description Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation
Synonyms YPR072W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2150 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING CCR4-NOT transcriptional regulation complex, NOT5 subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g18230 GI:9758905
Caenorhabditis elegans (Cel) CE18516 GI:17552240
Caenorhabditis elegans (Cel) CE22572 GI:17556256
Drosophila melanogaster (Dme) 7302229 GI:7302229
Homo sapiens (Hsa) Hs7657387
(CNOT3)
GI:7657387 O75175
Saccharomyces cerevisiae (Sce) YIL038c
(S000001300)
GI:6322151 P06102
Saccharomyces cerevisiae (Sce) YPR072w
(S000006276)
GI:6325329 Q12514
Schizosaccharomyces pombe (Spo) SPAC1B3.05 GI:19115701 O13870
Encephalitozoon cuniculi (Ecu) ECU06g1510 GI:19074402 Q8SV69


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
HsaCNOT3
SceS000001300
S000006276
ISS
SpoSPAC1B3.05
GO:0005829 cytosol C
IDA
SpoSPAC1B3.05
GO:0030015 CCR4-NOT core complex C
IPI
SceS000006276
S000001300
ISS
SpoSPAC1B3.05
GO:0004842 ubiquitin-protein ligase activity F
IMP
SceS000001300
S000006276
GO:0005515 protein binding F
IPI
HsaCNOT3
GO:0030528 transcription regulator activity F
IC
SpoSPAC1B3.05
ISS
AthAt5g18230
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening
P
IDA
SceS000001300
S000006276
ISS
SpoSPAC1B3.05
GO:0006351 transcription, DNA-dependent P
RCA
SceS000001300
GO:0006352 transcription initiation P
RCA
SceS000006276
GO:0006354 RNA elongation P
IC
SpoSPAC1B3.05
RCA
SceS000001300
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IPI
SceS000001300
S000006276
ISS
SpoSPAC1B3.05
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000001300
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IMP
SceS000006276
RCA
SceS000001300
GO:0006402 mRNA catabolic process P
IC
SpoSPAC1B3.05
GO:0016481 negative regulation of transcription P
ISS
AthAt5g18230
GO:0016567 protein ubiquitination P
IMP
SceS000006276
S000001300
GO:0032774 RNA biosynthetic process P
RCA
SceS000001300

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
74854

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) NOT5
(S000006276)
GI:6325329 Q12514
Kluyveromyces lactis (Kla) KLLA0B09196g GI:50303977


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000006276
GO:0030015 CCR4-NOT core complex C
IPI
SceS000006276
GO:0004842 ubiquitin-protein ligase activity F
IMP
SceS000006276
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening
P
IDA
SceS000006276
GO:0006352 transcription initiation P
RCA
SceS000006276
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IPI
SceS000006276
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IMP
SceS000006276
GO:0016567 protein ubiquitination P
IMP
SceS000006276

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_680

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga11134 ENSANGP00000005181
Anopheles gambiae (Aga) aga11136 ENSANGP00000028744
Ashbya gossypii (Ago) ago1633 ADL108C
Ashbya gossypii (Ago) ago1377 ADL364C
Arabidopsis thaliana (Ath) ath24067 At5g18230.1
Caenorhabditis elegans (Cel) cel19930 Y56A3A.1
Candida glabrata (Cgl) cgl718 CAGL0D01342g
Candida glabrata (Cgl) cgl4121 CAGL0L01001g
Cryptococcus neoformans (Cne) cne1239 180.m00177
Dictyostelium discoideum (Ddi) ddi11904 DDB0219997
Debaryomyces hansenii (Dha) dha4585 DEHA0F04422g
Drosophila melanogaster (Dme) dme3383 CG8426-PA
(FBgn0033029)
Danio rerio (Dre) dre26763 ENSDARP00000007916
Danio rerio (Dre) dre26765 ENSDARP00000024404
(zgc:92813)
Q642H1
Danio rerio (Dre) dre27794 ENSDARP00000025243
(cnot3)
Q1LUD9
Danio rerio (Dre) dre26762 ENSDARP00000039843
Danio rerio (Dre) dre26764 ENSDARP00000047770
Encephalitozoon cuniculi (Ecu) ecu1629 19074402
Takifugu rubripes (Fru) fru29559 SINFRUP00000129304
Takifugu rubripes (Fru) fru29560 SINFRUP00000129305
Takifugu rubripes (Fru) fru1129 SINFRUP00000138797
Takifugu rubripes (Fru) fru1128 SINFRUP00000166193
Takifugu rubripes (Fru) fru1127 SINFRUP00000166491
Takifugu rubripes (Fru) fru1130 SINFRUP00000166727
Takifugu rubripes (Fru) fru29561 SINFRUP00000170372
Takifugu rubripes (Fru) fru1131 SINFRUP00000170581
Takifugu rubripes (Fru) fru1126 SINFRUP00000174829
Homo sapiens (Hsa) hsa17064 ENSP00000221232
(CNOT3)
O75175-1
Homo sapiens (Hsa) hsa17065 ENSP00000347693
Kluyveromyces lactis (Kla) kla936 KLLA0B09196g
Kluyveromyces lactis (Kla) kla3139 KLLA0E04246g
Mus musculus (Mmu) mmu30965 ENSMUSP00000039098
(MGI:2385261)
Q8K0V4
Mus musculus (Mmu) mmu30904 ENSMUSP00000079716
Neurospora crassa (Ncr) ncr3744 NCU03855.2
Oryza sativa (Osa) osa66864 6834.m00191
Oryza sativa (Osa) osa65629 6872.m00144
Oryza sativa (Osa) osa86913 9219.m00129
Oryza sativa (Osa) osa87821 9528.m00177
Plasmodium falciparum (Pfa) pfa284 PF10_0062
Rattus norvegicus (Rno) rno782 ENSRNOP00000018017
(RGD:1304771)
Saccharomyces cerevisiae (Sce) sce3052 YIL038C
(S000001300)
Saccharomyces cerevisiae (Sce) sce6527 YPR072W
(S000006276)
Schizosaccharomyces pombe (Spo) spo4122 SPAC1B3.05 O13870
Yarrowia lipolytica (Yli) yli4130 YALI0E06435g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2385261
GO:0005737 cytoplasm C
IDA
SceS000001300
S000006276
ISS
SpoSPAC1B3.05
GO:0005829 cytosol C
IDA
SpoSPAC1B3.05
GO:0030015 CCR4-NOT core complex C
IPI
SceS000006276
S000001300
ISS
SpoSPAC1B3.05
GO:0004842 ubiquitin-protein ligase activity F
IMP
SceS000001300
S000006276
GO:0005515 protein binding F
IPI
MmuMGI:2385261
GO:0030528 transcription regulator activity F
IC
SpoSPAC1B3.05
ISS
AthAt5g18230
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening
P
IDA
SceS000001300
S000006276
ISS
SpoSPAC1B3.05
GO:0006350 transcription P
ISS
DmeFBgn0033029
GO:0006351 transcription, DNA-dependent P
RCA
SceS000001300
GO:0006352 transcription initiation P
RCA
SceS000006276
GO:0006354 RNA elongation P
IC
SpoSPAC1B3.05
RCA
SceS000001300
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IPI
SceS000001300
S000006276
ISS
SpoSPAC1B3.05
GO:0006366 transcription from RNA polymerase II
promoter
P
RCA
SceS000001300
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IMP
SceS000006276
RCA
SceS000001300
GO:0006402 mRNA catabolic process P
IC
SpoSPAC1B3.05
GO:0008150 biological_process P
ND
MmuMGI:2385261
GO:0016481 negative regulation of transcription P
ISS
AthAt5g18230
GO:0016567 protein ubiquitination P
IMP
SceS000006276
S000001300
GO:0032774 RNA biosynthetic process P
RCA
SceS000001300

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC1B3.05
(O13870)
YPR072W
(S000006276)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
IDA
SceS000006276
ISS
SpoSPAC1B3.05
GO:0005829 cytosol C
IDA
SpoSPAC1B3.05
GO:0030015 CCR4-NOT core complex C
IPI
SceS000006276
ISS
SpoSPAC1B3.05
GO:0004842 ubiquitin-protein ligase activity F
IMP
SceS000006276
GO:0030528 transcription regulator activity F
IC
SpoSPAC1B3.05
GO:0000289 nuclear-transcribed mRNA poly(A) tail
shortening
P
IDA
SceS000006276
ISS
SpoSPAC1B3.05
GO:0006352 transcription initiation P
RCA
SceS000006276
GO:0006354 RNA elongation P
IC
SpoSPAC1B3.05
GO:0006357 regulation of transcription from RNA polymerase II
promoter
P
IPI
SceS000006276
ISS
SpoSPAC1B3.05
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IMP
SceS000006276
GO:0006402 mRNA catabolic process P
IC
SpoSPAC1B3.05
GO:0016567 protein ubiquitination P
IMP
SceS000006276

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk