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Search term: YPR107C

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name YTH1
SGD link S000006311
Alternative ID YPR107C
Description Essential RNA-binding component of cleavage and polyadenylation factor, contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation
Synonyms YPR107C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1040 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g30460_1 GI:15220754
Arabidopsis thaliana (Ath) At5g56930 GI:15241989
Caenorhabditis elegans (Cel) CE07550
(WBGene00020827)		 GI:17542568 Q22805
Caenorhabditis elegans (Cel) CE23642_1 GI:17539746
Drosophila melanogaster (Dme) 7290068
(FBgn0003575)		 GI:17136526
Drosophila melanogaster (Dme) 7296160
(FBgn0015621)		 GI:17137188
Homo sapiens (Hsa) Hs14210506 GI:14210506
Homo sapiens (Hsa) Hs22041107 GI:22041107
Homo sapiens (Hsa) Hs22050713 GI:22050713
Homo sapiens (Hsa) Hs5729939
(CPSF4)		 GI:5729939 O95639
Saccharomyces cerevisiae (Sce) YPR107c
(S000006311)		 GI:6325364 Q06102
Schizosaccharomyces pombe (Spo) SPAC227.08c GI:19113874 Q9UTD1
Encephalitozoon cuniculi (Ecu) ECU01g0430 GI:19075052
Encephalitozoon cuniculi (Ecu) ECU10g1505 GI:19074760 Q8SUB4
Arabidopsis thaliana (Ath) At1g30460_1 GI:15220754
Arabidopsis thaliana (Ath) At5g56930 GI:15241989
Caenorhabditis elegans (Cel) CE07550
(WBGene00020827)		 GI:17542568 Q22805
Caenorhabditis elegans (Cel) CE23642_1 GI:17539746
Drosophila melanogaster (Dme) 7290068
(FBgn0003575)		 GI:17136526
Drosophila melanogaster (Dme) 7296160
(FBgn0015621)		 GI:17137188
Homo sapiens (Hsa) Hs14210506 GI:14210506
Homo sapiens (Hsa) Hs22041107 GI:22041107
Homo sapiens (Hsa) Hs22050713 GI:22050713
Homo sapiens (Hsa) Hs5729939
(CPSF4)		 GI:5729939 O95639
Saccharomyces cerevisiae (Sce) YPR107c
(S000006311)		 GI:6325364 Q06102
Schizosaccharomyces pombe (Spo) SPAC227.08c GI:19113874 Q9UTD1
Encephalitozoon cuniculi (Ecu) ECU01g0430 GI:19075052
Encephalitozoon cuniculi (Ecu) ECU10g1505 GI:19074760 Q8SUB4


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt1g30460
SpoSPAC227.08c
NAS
DmeFBgn0003575
GO:0005829 cytosol C
IDA
SpoSPAC227.08c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC227.08c
IPI
SceS000006311
ISS
AthAt1g30460
DmeFBgn0015621
TAS
SceS000006311
GO:0003676 nucleic acid binding F
ISS
AthAt1g30460
At5g56930
GO:0003723 RNA binding F
IDA
AthAt1g30460
SceS000006311
GO:0003729 mRNA binding F
NAS
DmeFBgn0003575
GO:0004519 endonuclease activity F
IDA
AthAt1g30460
GO:0004521 endoribonuclease activity F
IDA
DmeFBgn0015621
GO:0005515 protein binding F
IPI
AthAt1g30460
GO:0005516 calmodulin binding F
IDA
AthAt1g30460
GO:0016564 transcription repressor activity F
NAS
DmeFBgn0003575
GO:0000003 reproduction P
IMP
CelWBGene00020827
GO:0002119 nematode larval development P
IMP
CelWBGene00020827
GO:0006353 transcription termination P
RCA
SceS000006311
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC227.08c
IDA
SceS000006311
IMP
SceS000006311
ISS
DmeFBgn0015621
TAS
SceS000006311
GO:0006379 mRNA cleavage P
IDA
SceS000006311
IMP
SceS000006311
ISS
DmeFBgn0015621
TAS
SceS000006311
GO:0006396 RNA processing P
IDA
AthAt1g30460
TAS
AthAt1g30460
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00020827
GO:0009793 embryo development ending in seed
dormancy		 P
NAS
AthAt5g56930
GO:0031123 RNA 3'-end processing P
RCA
SceS000006311
GO:0040007 growth P
IMP
CelWBGene00020827
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00020827
GO:0040011 locomotion P
IMP
CelWBGene00020827
GO:0040018 positive regulation of multicellular organism
growth		 P
IMP
CelWBGene00020827
GO:0040019 positive regulation of embryonic
development		 P
IMP
CelWBGene00020827
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00020827

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
117936

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) yth1
(SPAC227.08c)		 GI:19113874 Q9UTD1
Saccharomyces cerevisiae (Sce) YTH1
(S000006311)		 GI:6325364 Q06102
Kluyveromyces lactis (Kla) KLLA0F08129g GI:50310851
Eremothecium gossypii (Ego) AGOS_AEL331W GI:45190275
Magnaporthe grisea (Mgr) MGG_00680 GI:39974347
Neurospora crassa (Ncr) NCU08353.1 GI:32417842


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC227.08c
GO:0005829 cytosol C
IDA
SpoSPAC227.08c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC227.08c
IPI
SceS000006311
TAS
SceS000006311
GO:0003723 RNA binding F
IDA
SceS000006311
GO:0006353 transcription termination P
RCA
SceS000006311
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC227.08c
IDA
SceS000006311
IMP
SceS000006311
TAS
SceS000006311
GO:0006379 mRNA cleavage P
IDA
SceS000006311
IMP
SceS000006311
TAS
SceS000006311
GO:0031123 RNA 3'-end processing P
RCA
SceS000006311

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1922

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4966 ENSANGP00000010762
Ashbya gossypii (Ago) ago2174 AEL331W
Arabidopsis thaliana (Ath) ath3180 At1g30460.1
Caenorhabditis elegans (Cel) cel5993 F11A10.8
(CE35178;
WBGene00044329)
Candida glabrata (Cgl) cgl1695 CAGL0G01694g
Cryptococcus neoformans (Cne) cne4674 186.m03525
Dictyostelium discoideum (Ddi) ddi2562 DDB0190840
Debaryomyces hansenii (Dha) dha2199 DEHA0C17358g
Drosophila melanogaster (Dme) dme149 CG3642-PA
(FBgn0015621)
Danio rerio (Dre) dre17734 ENSDARP00000007713
(LOC572939)
Danio rerio (Dre) dre26649 ENSDARP00000015899
Encephalitozoon cuniculi (Ecu) ecu1689 19075052
Takifugu rubripes (Fru) fru2331 SINFRUP00000162236
Gallus gallus (Gga) gga6461 ENSGALP00000007498
(CPSF4)
Homo sapiens (Hsa) hsa29035 ENSP00000292476
(CPSF4)		 O95639-1
Homo sapiens (Hsa) hsa29034 ENSP00000346513
Kluyveromyces lactis (Kla) kla4448 KLLA0F08129g
Mus musculus (Mmu) mmu21300 ENSMUSP00000031629
Neurospora crassa (Ncr) ncr8142 NCU08353.2
Oryza sativa (Osa) osa3409 1971.m00158
Plasmodium falciparum (Pfa) pfa1592 PF14_0193
Rattus norvegicus (Rno) rno8034 ENSRNOP00000001304
(RGD:620440)
Rattus norvegicus (Rno) rno8054 ENSRNOP00000030648
Rattus norvegicus (Rno) rno8032 ENSRNOP00000046991
(RGD:620440)		 Q5FVR7
Saccharomyces cerevisiae (Sce) sce6562 YPR107C
(S000006311)
Schizosaccharomyces pombe (Spo) spo1548 SPAC227.08c Q9UTD1
Yarrowia lipolytica (Yli) yli3324 YALI0D14982g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
AthAt1g30460
SpoSPAC227.08c
GO:0005829 cytosol C
IDA
SpoSPAC227.08c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC227.08c
IPI
SceS000006311
ISS
AthAt1g30460
DmeFBgn0015621
TAS
SceS000006311
GO:0003676 nucleic acid binding F
ISS
AthAt1g30460
GO:0003723 RNA binding F
IDA
AthAt1g30460
SceS000006311
GO:0004519 endonuclease activity F
IDA
AthAt1g30460
GO:0004521 endoribonuclease activity F
IDA
DmeFBgn0015621
GO:0005515 protein binding F
IPI
AthAt1g30460
GO:0005516 calmodulin binding F
IDA
AthAt1g30460
GO:0000910 cytokinesis P
IMP
CelWBGene00044329
GO:0002119 nematode larval development P
IMP
CelWBGene00044329
GO:0006353 transcription termination P
RCA
SceS000006311
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC227.08c
IDA
SceS000006311
IMP
SceS000006311
ISS
DmeFBgn0015621
TAS
SceS000006311
GO:0006379 mRNA cleavage P
IDA
SceS000006311
IMP
SceS000006311
ISS
DmeFBgn0015621
TAS
SceS000006311
GO:0006396 RNA processing P
IDA
AthAt1g30460
TAS
AthAt1g30460
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00044329
GO:0031123 RNA 3'-end processing P
RCA
SceS000006311
GO:0051301 cell division P
IMP
CelWBGene00044329

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPAC227.08c
(Q9UTD1)		 YPR107C
(S000006311)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC227.08c
GO:0005829 cytosol C
IDA
SpoSPAC227.08c
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex		 C
IDA
SpoSPAC227.08c
IPI
SceS000006311
TAS
SceS000006311
GO:0003723 RNA binding F
IDA
SceS000006311
GO:0006353 transcription termination P
RCA
SceS000006311
GO:0006378 mRNA polyadenylation P
IC
SpoSPAC227.08c
IDA
SceS000006311
IMP
SceS000006311
TAS
SceS000006311
GO:0006379 mRNA cleavage P
IDA
SceS000006311
IMP
SceS000006311
TAS
SceS000006311
GO:0031123 RNA 3'-end processing P
RCA
SceS000006311

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Search for gene by ID or name:

Query species:

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GO info in one table:

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