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Search term: YPR137W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRP9
SGD link S000006341
Alternative ID YPR137W
Description Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein
Synonyms YPR137W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0299 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U3 snoRNP-associated protein (contains WD40 repeats)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g05410 GI:15235574
Arabidopsis thaliana (Ath) At4g21130 GI:15233521
Caenorhabditis elegans (Cel) CE23942 GI:17535937
Drosophila melanogaster (Dme) 7303128 GI:7303128
Homo sapiens (Hsa) Hs4759276
(RRP9)
GI:4759276 O43818
Saccharomyces cerevisiae (Sce) YPR137w
(S000006341)
GI:6325394 Q06506
Schizosaccharomyces pombe (Spo) SPAC2E1P5.05 GI:19115055 Q9P7C0
Encephalitozoon cuniculi (Ecu) ECU07g0150 GI:19074437 Q8SV49
Arabidopsis thaliana (Ath) At4g05410 GI:15235574
Arabidopsis thaliana (Ath) At4g21130 GI:15233521
Caenorhabditis elegans (Cel) CE23942 GI:17535937
Drosophila melanogaster (Dme) 7303128 GI:7303128
Homo sapiens (Hsa) Hs4759276
(RRP9)
GI:4759276 O43818
Saccharomyces cerevisiae (Sce) YPR137w
(S000006341)
GI:6325394 Q06506
Schizosaccharomyces pombe (Spo) SPAC2E1P5.05 GI:19115055 Q9P7C0
Encephalitozoon cuniculi (Ecu) ECU07g0150 GI:19074437 Q8SV49
Arabidopsis thaliana (Ath) At4g05410 GI:15235574
Arabidopsis thaliana (Ath) At4g21130 GI:15233521
Caenorhabditis elegans (Cel) CE23942 GI:17535937
Drosophila melanogaster (Dme) 7303128 GI:7303128
Homo sapiens (Hsa) Hs4759276
(RRP9)
GI:4759276 O43818
Saccharomyces cerevisiae (Sce) YPR137w
(S000006341)
GI:6325394 Q06506
Schizosaccharomyces pombe (Spo) SPAC2E1P5.05 GI:19115055 Q9P7C0
Encephalitozoon cuniculi (Ecu) ECU07g0150 GI:19074437 Q8SV49


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC2E1P5.05
GO:0005680 anaphase-promoting complex C
ISS
AthAt4g05410
GO:0005730 nucleolus C
IDA
AthAt4g05410
SceS000006341
SpoSPAC2E1P5.05
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt4g05410
SpoSPAC2E1P5.05
TAS
HsaRRP9
GO:0030532 small nuclear ribonucleoprotein
complex
C
TAS
HsaRRP9
GO:0030686 90S preribosome C
IDA
SceS000006341
GO:0031428 box C/D snoRNP complex C
IDA
SceS000006341
GO:0032040 small-subunit processome C
IDA
SceS000006341
GO:0043234 protein complex C
NAS
SpoSPAC2E1P5.05
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt4g05410
At4g21130
GO:0000166 nucleotide binding F
ISS
AthAt4g05410
At4g21130
GO:0003676 nucleic acid binding F
ISS
AthAt4g05410
GO:0030515 snoRNA binding F
IPI
SceS000006341
ISS
SpoSPAC2E1P5.05
GO:0000154 rRNA modification P
TAS
SceS000006341
GO:0000266 mitochondrial fission P
ISS
AthAt4g05410
GO:0006364 rRNA processing P
ISS
AthAt4g21130
TAS
SceS000006341
GO:0009793 embryo development ending in seed
dormancy
P
NAS
AthAt4g21130
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC2E1P5.05

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3452

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) RRP9 GI:4759276 O43818
Pan troglodytes (Ptr) RRP9 GI:114587142
Mus musculus (Mmu) Rrp9
(MGI:2384313)
GI:21704248 Q91WM3
Rattus norvegicus (Rno) Rrp9 GI:109483852
Gallus gallus (Gga) RRP9 GI:118096677
Drosophila melanogaster (Dme) CG33505
(FBgn0053505)
GI:62471723
Anopheles gambiae (Aga) AgaP_AGAP005320 GI:158293980
Caenorhabditis elegans (Cel) T02H6.1
(CE41925;
WBGene00020171)
GI:193204868
Schizosaccharomyces pombe (Spo) SPAC2E1P5.05 GI:19115055 Q9P7C0
Saccharomyces cerevisiae (Sce) RRP9
(S000006341)
GI:6325394 Q06506
Kluyveromyces lactis (Kla) KLLA0B11077g GI:50304145
Eremothecium gossypii (Ego) AGOS_AAR102C GI:45184925
Magnaporthe grisea (Mgr) MGG_07030 GI:39971429
Neurospora crassa (Ncr) NCU01367.1 GI:32412760
Arabidopsis thaliana (Ath) AT4G05410 GI:15235574
Arabidopsis thaliana (Ath) EMB2271 GI:145340466
Oryza sativa (Osa) Os03g0625900 GI:115454195


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2384313
GO:0005634 nucleus C
IDA
SpoSPAC2E1P5.05
GO:0005680 anaphase-promoting complex C
ISS
AthAt4g05410
GO:0005730 nucleolus C
IDA
AthAt4g05410
SceS000006341
SpoSPAC2E1P5.05
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt4g05410
SpoSPAC2E1P5.05
TAS
HsaRRP9
GO:0030532 small nuclear ribonucleoprotein
complex
C
ISS
DmeFBgn0053505
TAS
HsaRRP9
GO:0030686 90S preribosome C
IDA
SceS000006341
GO:0031428 box C/D snoRNP complex C
IDA
SceS000006341
GO:0032040 small-subunit processome C
IDA
SceS000006341
GO:0043234 protein complex C
NAS
SpoSPAC2E1P5.05
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt4g05410
EMB2271
GO:0000166 nucleotide binding F
ISS
AthEMB2271
At4g05410
GO:0003674 molecular_function F
ND
MmuMGI:2384313
GO:0003676 nucleic acid binding F
ISS
AthAt4g05410
GO:0003729 mRNA binding F
ISS
DmeFBgn0053505
GO:0030515 snoRNA binding F
IPI
SceS000006341
ISS
SpoSPAC2E1P5.05
GO:0034511 U3 snoRNA binding F
IDA
DmeFBgn0053505
GO:0000154 rRNA modification P
TAS
SceS000006341
GO:0000266 mitochondrial fission P
ISS
AthAt4g05410
GO:0006364 rRNA processing P
ISS
AthEMB2271
DmeFBgn0053505
TAS
SceS000006341
GO:0008150 biological_process P
ND
MmuMGI:2384313
GO:0009793 embryo development ending in seed
dormancy
P
NAS
AthEMB2271
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC2E1P5.05

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2114

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga729 ENSANGP00000021079
Ashbya gossypii (Ago) ago288 AAR102C
Arabidopsis thaliana (Ath) ath18437 At4g05410.1
Arabidopsis thaliana (Ath) ath20019 At4g21130.1
Caenorhabditis elegans (Cel) cel14351 T02H6.1a
(CE41925;
WBGene00020171)
Caenorhabditis elegans (Cel) cel14352 T02H6.1b
(CE41926)
Candida glabrata (Cgl) cgl869 CAGL0D04884g
Cryptococcus neoformans (Cne) cne3977 185.m02576
Dictyostelium discoideum (Ddi) ddi10747 DDB0219852
Debaryomyces hansenii (Dha) dha3690 DEHA0E10153g
Drosophila melanogaster (Dme) dme5155 CG10220-PA
Danio rerio (Dre) dre2955 ENSDARP00000045946
Danio rerio (Dre) dre2958 ENSDARP00000047585
Takifugu rubripes (Fru) fru905 SINFRUP00000149309
Gallus gallus (Gga) gga4913 ENSGALP00000002168
(RRP9)
Homo sapiens (Hsa) hsa22572 ENSP00000232888
(RRP9)
O43818
Kluyveromyces lactis (Kla) kla1020 KLLA0B11077g
Mus musculus (Mmu) mmu28221 ENSMUSP00000038580
(MGI:2384313)
Q91WM3
Neurospora crassa (Ncr) ncr1326 NCU01367.2
Oryza sativa (Osa) osa20354 3541.m00126
Oryza sativa (Osa) osa66995 6848.m00121
Plasmodium falciparum (Pfa) pfa5041 PFL1290w
Rattus norvegicus (Rno) rno29223 ENSRNOP00000017469
(RGD:1307881)
B0BND5
Saccharomyces cerevisiae (Sce) sce6596 YPR137W
(S000006341)
Schizosaccharomyces pombe (Spo) spo989 SPAC2E1P5.05 Q9P7C0
Yarrowia lipolytica (Yli) yli711 YALI0A20614g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:2384313
GO:0005634 nucleus C
IDA
SpoSPAC2E1P5.05
GO:0005680 anaphase-promoting complex C
ISS
AthAt4g05410
GO:0005730 nucleolus C
IDA
AthAt4g05410
SceS000006341
SpoSPAC2E1P5.05
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
AthAt4g05410
SpoSPAC2E1P5.05
GO:0030686 90S preribosome C
IDA
SceS000006341
GO:0031428 box C/D snoRNP complex C
IDA
SceS000006341
GO:0032040 small-subunit processome C
IDA
SceS000006341
GO:0043234 protein complex C
NAS
SpoSPAC2E1P5.05
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt4g05410
At4g21130
GO:0000166 nucleotide binding F
ISS
AthAt4g05410
At4g21130
GO:0003674 molecular_function F
ND
MmuMGI:2384313
GO:0003676 nucleic acid binding F
ISS
AthAt4g05410
GO:0030515 snoRNA binding F
IPI
SceS000006341
ISS
SpoSPAC2E1P5.05
GO:0000154 rRNA modification P
TAS
SceS000006341
GO:0000266 mitochondrial fission P
ISS
AthAt4g05410
GO:0006364 rRNA processing P
ISS
AthAt4g21130
TAS
SceS000006341
GO:0008150 biological_process P
ND
MmuMGI:2384313
GO:0009793 embryo development ending in seed
dormancy
P
NAS
AthAt4g21130
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC2E1P5.05

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC2E1P5.05
(Q9P7C0)
YPR137W
(S000006341)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC2E1P5.05
GO:0005730 nucleolus C
IDA
SceS000006341
SpoSPAC2E1P5.05
GO:0005732 small nucleolar ribonucleoprotein
complex
C
ISS
SpoSPAC2E1P5.05
GO:0030686 90S preribosome C
IDA
SceS000006341
GO:0031428 box C/D snoRNP complex C
IDA
SceS000006341
GO:0032040 small-subunit processome C
IDA
SceS000006341
GO:0043234 protein complex C
NAS
SpoSPAC2E1P5.05
GO:0030515 snoRNA binding F
IPI
SceS000006341
ISS
SpoSPAC2E1P5.05
GO:0000154 rRNA modification P
TAS
SceS000006341
GO:0006364 rRNA processing P
TAS
SceS000006341
GO:0030490 maturation of SSU-rRNA P
ISS
SpoSPAC2E1P5.05

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk