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Search term: YPR178W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PRP4
SGD link S000006382
Alternative ID YPR178W
Description Splicing factor, component of the U4/U6-U5 snRNP complex
Synonyms YPR178W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0272 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g05720 GI:15224970
Arabidopsis thaliana (Ath) At2g41500 GI:15227373
Caenorhabditis elegans (Cel) CE05372
(WBGene00007972)		 GI:17505895 Q93339
Drosophila melanogaster (Dme) 7293972 GI:7293972
Drosophila melanogaster (Dme) 7301796 GI:7301796
Homo sapiens (Hsa) Hs4758558 GI:4758558
Homo sapiens (Hsa) Hs18544419 GI:18544419
Saccharomyces cerevisiae (Sce) YPR178w
(S000006382)		 GI:6325435 P20053
Schizosaccharomyces pombe (Spo) SPAC227.12 GI:19113878 Q9UTC7
Arabidopsis thaliana (Ath) At2g05720 GI:15224970
Arabidopsis thaliana (Ath) At2g41500 GI:15227373
Caenorhabditis elegans (Cel) CE05372
(WBGene00007972)		 GI:17505895 Q93339
Drosophila melanogaster (Dme) 7293972 GI:7293972
Drosophila melanogaster (Dme) 7301796 GI:7301796
Homo sapiens (Hsa) Hs4758558 GI:4758558
Homo sapiens (Hsa) Hs18544419 GI:18544419
Saccharomyces cerevisiae (Sce) YPR178w
(S000006382)		 GI:6325435 P20053
Schizosaccharomyces pombe (Spo) SPAC227.12 GI:19113878 Q9UTC7
Arabidopsis thaliana (Ath) At2g05720 GI:15224970
Arabidopsis thaliana (Ath) At2g41500 GI:15227373
Caenorhabditis elegans (Cel) CE05372
(WBGene00007972)		 GI:17505895 Q93339
Drosophila melanogaster (Dme) 7293972 GI:7293972
Drosophila melanogaster (Dme) 7301796 GI:7301796
Homo sapiens (Hsa) Hs4758558 GI:4758558
Homo sapiens (Hsa) Hs18544419 GI:18544419
Saccharomyces cerevisiae (Sce) YPR178w
(S000006382)		 GI:6325435 P20053
Schizosaccharomyces pombe (Spo) SPAC227.12 GI:19113878 Q9UTC7


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005681 spliceosomal complex C
ISS
AthAt2g41500
GO:0005829 cytosol C
IDA
SpoSPAC227.12
GO:0016607 nuclear speck C
IDA
AthAt2g41500
GO:0043234 protein complex C
NAS
SpoSPAC227.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000006382
ISS
SpoSPAC227.12
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g05720
At2g41500
GO:0000166 nucleotide binding F
ISS
AthAt2g41500
At2g05720
GO:0003674 molecular_function F
ND
SceS000006382
SpoSPAC227.12
GO:0000003 reproduction P
IMP
CelWBGene00007972
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000006382
ISS
AthAt2g41500
SpoSPAC227.12
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00007972
GO:0001709 cell fate determination P
IMP
AthAt2g41500
GO:0002119 nematode larval development P
IMP
CelWBGene00007972
GO:0007369 gastrulation P
IMP
CelWBGene00007972
GO:0008150 biological_process P
ND
AthAt2g05720
GO:0009560 embryo sac egg cell differentiation P
IMP
AthAt2g41500
GO:0009790 embryo development P
IMP
CelWBGene00007972
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007972
GO:0016071 mRNA metabolic process P
RCA
SceS000006382
GO:0040007 growth P
IMP
CelWBGene00007972
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007972
GO:0040011 locomotion P
IMP
CelWBGene00007972
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00007972

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
3446

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) PRPF4 GI:24431950
Pan troglodytes (Ptr) PRPF4 GI:114626281
Canis familiaris (Cfa) PRPF4 GI:73971978
Mus musculus (Mmu) Prpf4
(MGI:1917302)		 GI:55925589 Q059T9
Rattus norvegicus (Rno) Prpf4
(RGD:1311303)		 GI:62649051
Gallus gallus (Gga) PRPF4 GI:118099168
Drosophila melanogaster (Dme) CG6322
(FBgn0036733)		 GI:21355245
Anopheles gambiae (Aga) AgaP_AGAP002144 GI:158285020
Caenorhabditis elegans (Cel) prp-4
(CE05372;
WBGene00007972)		 GI:17505895 Q93339
Schizosaccharomyces pombe (Spo) SPAC227.12 GI:19113878 Q9UTC7
Saccharomyces cerevisiae (Sce) PRP4
(S000006382)		 GI:6325435 P20053
Kluyveromyces lactis (Kla) KLLA0E04741g GI:50308323
Eremothecium gossypii (Ego) AGOS_AEL269C GI:45190337
Magnaporthe grisea (Mgr) MGG_01259 GI:145613920
Neurospora crassa (Ncr) NCU03196.1 GI:32420377
Arabidopsis thaliana (Ath) EMB2776 GI:15227373
Oryza sativa (Osa) Os03g0355200 GI:115453063


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
HsaPRPF4
GO:0005681 spliceosomal complex C
IC
HsaPRPF4
ISS
DmeFBgn0036733
NAS
HsaPRPF4
GO:0005687 U4 snRNP C
ISS
DmeFBgn0036733
GO:0005688 U6 snRNP C
ISS
DmeFBgn0036733
GO:0005829 cytosol C
IDA
SpoSPAC227.12
GO:0015030 Cajal body C
IDA
HsaPRPF4
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0036733
GO:0043234 protein complex C
NAS
SpoSPAC227.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000006382
ISO
MmuMGI:1917302
ISS
SpoSPAC227.12
GO:0071001 U4/U6 snRNP C
IDA
HsaPRPF4
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036733
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0036733
GO:0003674 molecular_function F
ND
MmuMGI:1917302
SceS000006382
SpoSPAC227.12
GO:0005515 protein binding F
IPI
HsaPRPF4
GO:0017070 U6 snRNA binding F
IDA
DmeFBgn0036733
GO:0030621 U4 snRNA binding F
IDA
DmeFBgn0036733
GO:0000003 reproduction P
IMP
CelWBGene00007972
GO:0000375 RNA splicing, via transesterification
reactions		 P
NAS
HsaPRPF4
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036733
HsaPRPF4
IPI
SceS000006382
ISO
MmuMGI:1917302
ISS
DmeFBgn0036733
SpoSPAC227.12
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00007972
GO:0002119 nematode larval development P
IMP
CelWBGene00007972
GO:0006396 RNA processing P
TAS
HsaPRPF4
GO:0007369 gastrulation P
IMP
CelWBGene00007972
GO:0008380 RNA splicing P
EXP
HsaPRPF4
ISS
DmeFBgn0036733
NAS
HsaPRPF4
GO:0009790 embryo development P
IMP
CelWBGene00007972
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00007972
GO:0016071 mRNA metabolic process P
RCA
SceS000006382
GO:0040007 growth P
IMP
CelWBGene00007972
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007972
GO:0040011 locomotion P
IMP
CelWBGene00007972
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00007972

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2270

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4267 ENSANGP00000019389
Ashbya gossypii (Ago) ago2236 AEL269C
Arabidopsis thaliana (Ath) ath11307 At2g41500.1
Caenorhabditis elegans (Cel) cel3565 C36B1.5
(CE05372;
WBGene00007972)
Candida glabrata (Cgl) cgl2049 CAGL0G09845g
Cryptococcus neoformans (Cne) cne904 163.m06313
Dictyostelium discoideum (Ddi) ddi7968 DDB0187564
Debaryomyces hansenii (Dha) dha3380 DEHA0E03091g
Drosophila melanogaster (Dme) dme9994 CG6322-PA
(FBgn0036733)
Danio rerio (Dre) dre20000 ENSDARP00000003393
Takifugu rubripes (Fru) fru10925 SINFRUP00000153743
Gallus gallus (Gga) gga8194 ENSGALP00000014372
(PRPF4)
Gallus gallus (Gga) gga8195 ENSGALP00000014373
Homo sapiens (Hsa) hsa31749 ENSP00000344622
Kluyveromyces lactis (Kla) kla3162 KLLA0E04741g
Mus musculus (Mmu) mmu31211 ENSMUSP00000071620
Mus musculus (Mmu) mmu18256 ENSMUSP00000075892
Neurospora crassa (Ncr) ncr3097 NCU03196.2
Oryza sativa (Osa) osa58816 6471.m00177
Oryza sativa (Osa) osa58818 6471.m00179
Plasmodium falciparum (Pfa) pfa4168 MAL13P1.385
Rattus norvegicus (Rno) rno23265 ENSRNOP00000019910
(RGD:1311303)
Saccharomyces cerevisiae (Sce) sce6647 YPR178W
(S000006382)
Schizosaccharomyces pombe (Spo) spo1403 SPAC227.12 Q9UTC7
Yarrowia lipolytica (Yli) yli5022 YALI0E28226g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005681 spliceosomal complex C
ISS
AthAt2g41500
DmeFBgn0036733
GO:0005687 U4 snRNP C
ISS
DmeFBgn0036733
GO:0005688 U6 snRNP C
ISS
DmeFBgn0036733
GO:0005829 cytosol C
IDA
SpoSPAC227.12
GO:0016607 nuclear speck C
IDA
AthAt2g41500
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0036733
GO:0043234 protein complex C
NAS
SpoSPAC227.12
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000006382
ISS
SpoSPAC227.12
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0036733
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0036733
GO:0080008 CUL4 RING ubiquitin ligase complex C
ISS
AthAt2g41500
GO:0000166 nucleotide binding F
ISS
AthAt2g41500
GO:0003674 molecular_function F
ND
SceS000006382
SpoSPAC227.12
GO:0017070 U6 snRNA binding F
IDA
DmeFBgn0036733
GO:0030621 U4 snRNA binding F
IDA
DmeFBgn0036733
GO:0000003 reproduction P
IMP
CelWBGene00007972
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0036733
IPI
SceS000006382
ISS
AthAt2g41500
DmeFBgn0036733
SpoSPAC227.12
GO:0001703 gastrulation with mouth forming
first		 P
IMP
CelWBGene00007972
GO:0001709 cell fate determination P