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Search term: YPR182W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SMX3
SGD link S000006386
Alternative ID YPR182W
Description Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F
Synonyms YPR182W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3482 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING Small nuclear ribonucleoprotein (snRNP) SMF

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At4g30220 GI:15234669
Caenorhabditis elegans (Cel) CE00446
(WBGene00004918)		 GI:17557029 P34659
Drosophila melanogaster (Dme) 7303504 GI:17647325
Homo sapiens (Hsa) Hs4507131
(SNRPF)		 GI:4507131 P62306
Homo sapiens (Hsa) Hs14755615 GI:14755615
Saccharomyces cerevisiae (Sce) YPR182w
(S000006386)		 GI:6325440 P54999
Schizosaccharomyces pombe (Spo) SPBC3E7.14 GI:19112893 O59734
Encephalitozoon cuniculi (Ecu) ECU04g0790 GI:19074156 Q8SS46


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPBC3E7.14
ISS
AthAt4g30220
GO:0005654 nucleoplasm C
EXP
HsaSNRPF
GO:0005681 spliceosomal complex C
IC
SpoSPBC3E7.14
IDA
HsaSNRPF
GO:0005682 U5 snRNP C
IDA
SceS000006386
GO:0005683 U7 snRNP C
IDA
HsaSNRPF
GO:0005685 U1 snRNP C
IDA
SceS000006386
SpoSPBC3E7.14
GO:0005730 nucleolus C
IDA
AthAt4g30220
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g30220
GO:0005829 cytosol C
EXP
HsaSNRPF
IDA
SpoSPBC3E7.14
GO:0030532 small nuclear ribonucleoprotein
complex		 C
IDA
HsaSNRPF
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000006386
ISS
SpoSPBC3E7.14
GO:0003674 molecular_function F
ND
AthAt4g30220
SceS000006386
GO:0003723 RNA binding F
IMP
HsaSNRPF
RCA
SceS000006386
GO:0005515 protein binding F
IPI
HsaSNRPF
GO:0000003 reproduction P
IMP
CelWBGene00004918
GO:0000387 spliceosomal snRNP assembly P
EXP
HsaSNRPF
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC3E7.14
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000006386
ISS
SpoSPBC3E7.14
GO:0002119 nematode larval development P
IMP
CelWBGene00004918
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004918
GO:0008380 RNA splicing P
EXP
HsaSNRPF
IMP
HsaSNRPF
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004918
GO:0016071 mRNA metabolic process P
RCA
SceS000006386
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004918
GO:0032940 secretion by cell P
IMP
CelWBGene00004918
GO:0040007 growth P
IMP
CelWBGene00004918
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004918
GO:0040039 inductive cell migration P
IMP
CelWBGene00004918

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
52481

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SMX3
(S000006386)		 GI:6325440 P54999
Kluyveromyces lactis (Kla) KLLA0E04851g GI:50308333
Eremothecium gossypii (Ego) AGOS_AEL274C GI:45190332


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005682 U5 snRNP C
IDA
SceS000006386
GO:0005685 U1 snRNP C
IDA
SceS000006386
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000006386
GO:0003674 molecular_function F
ND
SceS000006386
GO:0003723 RNA binding F
RCA
SceS000006386
GO:0000398 nuclear mRNA splicing, via spliceosome P
IPI
SceS000006386
GO:0016071 mRNA metabolic process P
RCA
SceS000006386

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2128

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga4877 ENSANGP00000002801
Ashbya gossypii (Ago) ago2231 AEL274C
Arabidopsis thaliana (Ath) ath21073 At4g30220.1
Caenorhabditis elegans (Cel) cel22103 ZK652.1
(CE00446;
WBGene00004918)
Candida glabrata (Cgl) cgl2053 CAGL0G09933g
Cryptococcus neoformans (Cne) cne576 163.m06267
Dictyostelium discoideum (Ddi) ddi5893 DDB0206218
Debaryomyces hansenii (Dha) dha3701 DEHA0E10384g
Drosophila melanogaster (Dme) dme4619 CG16792-PA
(FBgn0000426)
Encephalitozoon cuniculi (Ecu) ecu794 19074156
Takifugu rubripes (Fru) fru5619 SINFRUP00000129927
Takifugu rubripes (Fru) fru31842 SINFRUP00000167511
Gallus gallus (Gga) gga635 ENSGALP00000018594
(SNRPF)
Homo sapiens (Hsa) hsa8010 ENSP00000266735
(SNRPF)		 P62306
Kluyveromyces lactis (Kla) kla3167 KLLA0E04851g
Mus musculus (Mmu) mmu2745 ENSMUSP00000020203
(MGI:1917128)		 P62307
Mus musculus (Mmu) mmu19471 ENSMUSP00000071222
Neurospora crassa (Ncr) ncr1568 NCU01614.2
Oryza sativa (Osa) osa22424 3708.m00089
Oryza sativa (Osa) osa27897 4220.m00165
Plasmodium falciparum (Pfa) pfa731 PF11_0280
Rattus norvegicus (Rno) rno26643 ENSRNOP00000007351
(RGD:1588229)
Saccharomyces cerevisiae (Sce) sce6651 YPR182W
(S000006386)
Schizosaccharomyces pombe (Spo) spo2945 SPBC3E7.14 O59734
Yarrowia lipolytica (Yli) yli189 YALI0A05423g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
MmuMGI:1917128
GO:0005634 nucleus C
IDA
SpoSPBC3E7.14
ISS
AthAt4g30220
GO:0005681 spliceosomal complex C
IC
SpoSPBC3E7.14
ISS
DmeFBgn0000426
NAS
DmeFBgn0000426
GO:0005682 U5 snRNP C
IDA
SceS000006386
GO:0005685 U1 snRNP C
IDA
SceS000006386
SpoSPBC3E7.14
GO:0005730 nucleolus C
IDA
AthAt4g30220
GO:0005732 small nucleolar ribonucleoprotein
complex		 C
ISS
AthAt4g30220
GO:0005829 cytosol C
IDA
SpoSPBC3E7.14
GO:0030532 small nuclear ribonucleoprotein
complex		 C
ISS
DmeFBgn0000426
NAS
DmeFBgn0000426
GO:0046540 U4/U6 x U5 tri-snRNP complex C
IDA
SceS000006386
ISS
SpoSPBC3E7.14
GO:0071011 precatalytic spliceosome C
IDA
DmeFBgn0000426
GO:0071013 catalytic step 2 spliceosome C
IDA
DmeFBgn0000426
GO:0003674 molecular_function F
ND
AthAt4g30220
MmuMGI:1917128
PfaPF11_0280
SceS000006386
GO:0003723 RNA binding F
RCA
SceS000006386
GO:0000003 reproduction P
IMP
CelWBGene00004918
GO:0000395 nuclear mRNA 5'-splice site recognition P
IC
SpoSPBC3E7.14
GO:0000398 nuclear mRNA splicing, via spliceosome P
IC
DmeFBgn0000426
IPI
SceS000006386
ISS
DmeFBgn0000426
SpoSPBC3E7.14
NAS
DmeFBgn0000426
GO:0002119 nematode larval development P
IMP
CelWBGene00004918
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00004918
GO:0007052 mitotic spindle organization P
IMP
DmeFBgn0000426
GO:0008150 biological_process P
ND
MmuMGI:1917128
GO:0009792 embryo development ending in birth or egg
hatching		 P
IMP
CelWBGene00004918
GO:0016071 mRNA metabolic process P
RCA
SceS000006386
GO:0018996 molting cycle, collagen and cuticulin-based
cuticle		 P
IMP
CelWBGene00004918
GO:0032940 secretion by cell P
IMP
CelWBGene00004918
GO:0040007 growth P
IMP
CelWBGene00004918
GO:0040027 negative regulation of vulval development P
IMP
CelWBGene00004918
GO:0040039 inductive cell migration P
IMP
CelWBGene00004918

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Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPBC3E7.14
(O59734)		 YPR182W
(S000006386)