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Search term: YPR187W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPO26
SGD link S000006391
Alternative ID YPR187W
Description RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit
Synonyms YPR187W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG3405 ACDHYPE

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING RNA polymerase subunit K

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At2g04630 GI:15224039
Arabidopsis thaliana (Ath) At5g51940 GI:15242235
Caenorhabditis elegans (Cel) CE02117
(WBGene00007355)
GI:17531543 Q17684
Drosophila melanogaster (Dme) 7296761
(FBgn0003275)
GI:17864588
Homo sapiens (Hsa) Hs11527390
(POLR2F)
GI:11527390 P61218
Saccharomyces cerevisiae (Sce) YPR187w
(S000006391)
GI:6325445 P20435
Schizosaccharomyces pombe (Spo) SPCC1020.04c GI:19075456 P36595
Encephalitozoon cuniculi (Ecu) ECU08g0320 GI:19173358 Q8SRE9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex
C
IPI
AthAt5g51940
GO:0005634 nucleus C
IDA
HsaPOLR2F
SpoSPCC1020.04c
GO:0005654 nucleoplasm C
EXP
HsaPOLR2F
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IDA
HsaPOLR2F
SceS000006391
IPI
AthAt5g51940
At2g04630
ISS
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0005666 DNA-directed RNA polymerase III
complex
C
IDA
SceS000006391
IGI
SpoSPCC1020.04c
TAS
SceS000006391
GO:0005730 nucleolus C
IDA
HsaPOLR2F
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000006391
IGI
SpoSPCC1020.04c
TAS
SceS000006391
GO:0005829 cytosol C
IDA
SpoSPCC1020.04c
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
IGI
SpoSPCC1020.04c
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt5g51940
GO:0003677 DNA binding F
ISS
AthAt5g51940
At2g04630
GO:0003899 DNA-directed RNA polymerase activity F
IC
SceS000006391
IDA
SceS000006391
IGI
SpoSPCC1020.04c
ISS
AthAt2g04630
At5g51940
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0004672 protein kinase activity F
IDA
HsaPOLR2F
GO:0000003 reproduction P
IMP
CelWBGene00007355
GO:0006351 transcription, DNA-dependent P
ISS
AthAt5g51940
At2g04630
GO:0006354 RNA elongation P
TAS
SpoSPCC1020.04c
GO:0006360 transcription from RNA polymerase I
promoter
P
IC
SpoSPCC1020.04c
RCA
SceS000006391
TAS
SceS000006391
GO:0006366 transcription from RNA polymerase II
promoter
P
IC
SpoSPCC1020.04c
IDA
HsaPOLR2F
IMP
SceS000006391
ISS
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
EXP
HsaPOLR2F
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
EXP
HsaPOLR2F
GO:0006383 transcription from RNA polymerase III
promoter
P
IC
SpoSPCC1020.04c
IMP
SceS000006391
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007355
GO:0008380 RNA splicing P
EXP
HsaPOLR2F
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00007355
GO:0042797 tRNA transcription from RNA polymerase III
promoter
P
IDA
SceS000006391
GO:0051049 regulation of transport P
RCA
SceS000006391

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
7178

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) POLR2F GI:11527390 P61218
Pan troglodytes (Ptr) POLR2F GI:55661193
Canis familiaris (Cfa) POLR2F GI:57092769
Mus musculus (Mmu) Polr2f
(MGI:1349393)
GI:58037181 P61219
Rattus norvegicus (Rno) Polr2f
(RGD:708567)
GI:13786166
Gallus gallus (Gga) POLR2F GI:45382031
Drosophila melanogaster (Dme) RpII18
(FBgn0003275)
GI:17864588
Anopheles gambiae (Aga) AgaP_AGAP005873 GI:58387910
Caenorhabditis elegans (Cel) rpb-6
(CE02117;
WBGene00007355)
GI:17531543 Q17684
Schizosaccharomyces pombe (Spo) rpb6
(SPCC1020.04c)
GI:19075456 P36595
Saccharomyces cerevisiae (Sce) RPO26
(S000006391)
GI:6325445 P20435
Kluyveromyces lactis (Kla) KLLA0B03476g GI:50303495
Eremothecium gossypii (Ego) AGOS_AEL279C GI:45190327
Magnaporthe grisea (Mgr) MGG_05321 GI:39939838
Arabidopsis thaliana (Ath) NRPB6B GI:15224039
Arabidopsis thaliana (Ath) NRPB6A GI:15242235
Oryza sativa (Osa) Os03g0586600 GI:115453939
Oryza sativa (Osa) Os07g0463100 GI:115471967
Plasmodium falciparum (Pfa) MAL3P1.13 GI:124504731


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex
C
IPI
AthNRPB6A
GO:0005575 cellular_component C
ND
MmuMGI:1349393
GO:0005634 nucleus C
IDA
HsaPOLR2F
SpoSPCC1020.04c
GO:0005654 nucleoplasm C
EXP
HsaPOLR2F
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IDA
HsaPOLR2F
SceS000006391
IPI
AthNRPB6A
NRPB6B
ISS
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0005666 DNA-directed RNA polymerase III
complex
C
IDA
SceS000006391
IGI
SpoSPCC1020.04c
TAS
SceS000006391
GO:0005730 nucleolus C
IDA
HsaPOLR2F
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000006391
IGI
SpoSPCC1020.04c
TAS
SceS000006391
GO:0005829 cytosol C
IDA
SpoSPCC1020.04c
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
IGI
SpoSPCC1020.04c
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthNRPB6A
GO:0003677 DNA binding F
ISS
AthNRPB6A
NRPB6B
GO:0003899 DNA-directed RNA polymerase activity F
IC
SceS000006391
IDA
MmuMGI:1349393
SceS000006391
IGI
SpoSPCC1020.04c
ISS
AthNRPB6A
NRPB6B
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0004672 protein kinase activity F
IDA
HsaPOLR2F
GO:0000003 reproduction P
IMP
CelWBGene00007355
GO:0006351 transcription, DNA-dependent P
ISS
AthNRPB6A
NRPB6B
GO:0006354 RNA elongation P
TAS
SpoSPCC1020.04c
GO:0006360 transcription from RNA polymerase I
promoter
P
IC
SpoSPCC1020.04c
RCA
SceS000006391
TAS
SceS000006391
GO:0006366 transcription from RNA polymerase II
promoter
P
IC
SpoSPCC1020.04c
IDA
HsaPOLR2F
IMP
SceS000006391
ISS
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0006367 transcription initiation from RNA polymerase II
promoter
P
EXP
HsaPOLR2F
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
EXP
HsaPOLR2F
GO:0006383 transcription from RNA polymerase III
promoter
P
IC
SpoSPCC1020.04c
IMP
SceS000006391
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007355
GO:0008152 metabolic process P
IDA
MmuMGI:1349393
GO:0008380 RNA splicing P
EXP
HsaPOLR2F
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00007355
GO:0042797 tRNA transcription from RNA polymerase III
promoter
P
IDA
SceS000006391
GO:0051049 regulation of transport P
RCA
SceS000006391

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1845

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga1316 ENSANGP00000017467
Ashbya gossypii (Ago) ago2226 AEL279C
Arabidopsis thaliana (Ath) ath7870 At2g04630.1
Arabidopsis thaliana (Ath) ath27141 At5g51940.1
Caenorhabditis elegans (Cel) cel1209 C06A1.5
(CE02117;
WBGene00007355)
Candida glabrata (Cgl) cgl2058 CAGL0G10043g
Cryptococcus neoformans (Cne) cne105 162.m02720
Dictyostelium discoideum (Ddi) ddi13652 DDB0216272
Debaryomyces hansenii (Dha) dha3698 DEHA0E10318g
Drosophila melanogaster (Dme) dme10999 CG1163-PA
(FBgn0003275)
Encephalitozoon cuniculi (Ecu) ecu189 19173358
Takifugu rubripes (Fru) fru1518 SINFRUP00000165063
Gallus gallus (Gga) gga925 ENSGALP00000020057
(POLR2F)
Q9PT88
Homo sapiens (Hsa) hsa21644 ENSP00000215960
(POLR2F)
B0QYL9
Kluyveromyces lactis (Kla) kla687 KLLA0B03476g
Mus musculus (Mmu) mmu9290 ENSMUSP00000043566
(MGI:1349393)
P61219
Neurospora crassa (Ncr) ncr10504 NCU11012.2
Oryza sativa (Osa) osa35862 4810.m00155
Oryza sativa (Osa) osa41651 5262.m00208
Oryza sativa (Osa) osa85552 8378.m00191
Plasmodium falciparum (Pfa) pfa2686 PFC0155c
Rattus norvegicus (Rno) rno27380 ENSRNOP00000015009
(RGD:708567)
O88828
Saccharomyces cerevisiae (Sce) sce6656 YPR187W
(S000006391)
Schizosaccharomyces pombe (Spo) spo569 SPCC1020.04c P36595
Yarrowia lipolytica (Yli) yli5553 YALI0F05082g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000418 DNA-directed RNA polymerase IV
complex
C
IPI
AthAt5g51940
GO:0005575 cellular_component C
ND
MmuMGI:1349393
GO:0005634 nucleus C
IDA
SpoSPCC1020.04c
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IDA
SceS000006391
IPI
AthAt5g51940
At2g04630
ISS
DmeFBgn0003275
PfaPFC0155c
NAS
DmeFBgn0003275
GO:0005666 DNA-directed RNA polymerase III
complex
C
IDA
SceS000006391
IGI
SpoSPCC1020.04c
TAS
SceS000006391
GO:0005736 DNA-directed RNA polymerase I complex C
IDA
SceS000006391
IGI
SpoSPCC1020.04c
TAS
SceS000006391
GO:0005829 cytosol C
IDA
SpoSPCC1020.04c
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
IGI
SpoSPCC1020.04c
GO:0080137 DNA-directed RNA polymerase V complex C
IPI
AthAt5g51940
GO:0003677 DNA binding F
ISS
AthAt5g51940
At2g04630
GO:0003899 DNA-directed RNA polymerase activity F
IC
SceS000006391
IDA
MmuMGI:1349393
SceS000006391
IGI
SpoSPCC1020.04c
ISS
AthAt2g04630
At5g51940
DmeFBgn0003275
NAS
DmeFBgn0003275
GO:0000003 reproduction P
IMP
CelWBGene00007355
GO:0006351 transcription, DNA-dependent P
ISS
AthAt5g51940
At2g04630
GO:0006354 RNA elongation P
TAS
SpoSPCC1020.04c
GO:0006360 transcription from RNA polymerase I
promoter
P
IC
SpoSPCC1020.04c
RCA
SceS000006391
TAS
SceS000006391
GO:0006366 transcription from RNA polymerase II
promoter
P
IC
SpoSPCC1020.04c
IMP
SceS000006391
ISS
DmeFBgn0003275
PfaPFC0155c
NAS
DmeFBgn0003275
GO:0006383 transcription from RNA polymerase III
promoter
P
IC
SpoSPCC1020.04c
IMP
SceS000006391
GO:0006898 receptor-mediated endocytosis P
IMP
CelWBGene00007355
GO:0008152 metabolic process P
IDA
MmuMGI:1349393
GO:0009792 embryo development ending in birth or egg
hatching
P
IMP
CelWBGene00007355
GO:0042797 tRNA transcription from RNA polymerase III
promoter
P
IDA
SceS000006391
GO:0051049 regulation of transport P
RCA
SceS000006391

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPCC1020.04c
(P36595)
YPR187W
(S000006391)