YOGY Home YOGY Help

Search term: YPR189W

Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SKI3
SGD link S000006393
Alternative ID YPR189W
Description Ski complex component and TPR protein, mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay
Synonyms YPR189W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1127 ACDHYP-

KOGs classification KOGs description
INFORMATION STORAGE AND PROCESSING TPR repeat-containing protein

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g76630 GI:15220960
Caenorhabditis elegans (Cel) CE27256 GI:17565824
Drosophila melanogaster (Dme) 7303946 GI:7303946
Homo sapiens (Hsa) Hs7662078
(TTC37)		 GI:7662078 Q6PGP7
Saccharomyces cerevisiae (Sce) YPR189w
(S000006393)		 GI:6325447 P17883
Schizosaccharomyces pombe (Spo) SPCC1919.05 GI:19075987 O94474
Arabidopsis thaliana (Ath) At1g76630 GI:15220960
Caenorhabditis elegans (Cel) CE27256 GI:17565824
Drosophila melanogaster (Dme) 7303946 GI:7303946
Homo sapiens (Hsa) Hs7662078
(TTC37)		 GI:7662078 Q6PGP7
Saccharomyces cerevisiae (Sce) YPR189w
(S000006393)		 GI:6325447 P17883
Schizosaccharomyces pombe (Spo) SPCC1919.05 GI:19075987 O94474


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g76630
GO:0005737 cytoplasm C
ISS
SpoSPCC1919.05
GO:0005829 cytosol C
IDA
SpoSPCC1919.05
GO:0043234 protein complex C
NAS
SpoSPCC1919.05
GO:0055087 Ski complex C
IDA
SceS000006393
IPI
SceS000006393
ISS
SpoSPCC1919.05
GO:0003674 molecular_function F
ND
SceS000006393
SpoSPCC1919.05
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1919.05
GO:0008150 biological_process P
ND
AthAt1g76630
GO:0017148 negative regulation of translation P
ISS
SpoSPCC1919.05
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000006393
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IGI
SceS000006393
IMP
SceS000006393
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IMP
SceS000006393

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
40567

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPCC1919.05 GI:19075987 O94474
Saccharomyces cerevisiae (Sce) SKI3
(S000006393)		 GI:6325447 P17883
Kluyveromyces lactis (Kla) KLLA0B03520g GI:50303499
Eremothecium gossypii (Ego) AGOS_AEL281C GI:45190325
Magnaporthe grisea (Mgr) MGG_03269 GI:39942378
Neurospora crassa (Ncr) NCU09438.1 GI:32423385


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
ISS
SpoSPCC1919.05
GO:0005829 cytosol C
IDA
SpoSPCC1919.05
GO:0043234 protein complex C
NAS
SpoSPCC1919.05
GO:0055087 Ski complex C
IDA
SceS000006393
IPI
SceS000006393
ISS
SpoSPCC1919.05
GO:0003674 molecular_function F
ND
SceS000006393
SpoSPCC1919.05
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1919.05
GO:0017148 negative regulation of translation P
ISS
SpoSPCC1919.05
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000006393
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IGI
SceS000006393
IMP
SceS000006393
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IMP
SceS000006393

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_4357

Species OrthoMCL
sequence		 Model organism
protein page		 UniProt link
Anopheles gambiae (Aga) aga5599 ENSANGP00000012958
Ashbya gossypii (Ago) ago2224 AEL281C
Arabidopsis thaliana (Ath) ath6987 At1g76630.1
Candida glabrata (Cgl) cgl2060 CAGL0G10087g
Cryptococcus neoformans (Cne) cne1062 163.m06619
Dictyostelium discoideum (Ddi) ddi13148 DDB0191302
Debaryomyces hansenii (Dha) dha3666 DEHA0E09625g
Drosophila melanogaster (Dme) dme4000 CG8777-PA
(FBgn0033376)
Danio rerio (Dre) dre19839 ENSDARP00000002860
Danio rerio (Dre) dre19813 ENSDARP00000024229
Takifugu rubripes (Fru) fru3884 SINFRUP00000140442
Gallus gallus (Gga) gga27439 ENSGALP00000023595
(KIAA0372)
Homo sapiens (Hsa) hsa25509 ENSP00000351596
(TTC37)		 Q6PGP7
Kluyveromyces lactis (Kla) kla689 KLLA0B03520g
Mus musculus (Mmu) mmu7297 ENSMUSP00000041888
Neurospora crassa (Ncr) ncr9194 NCU09438.2
Oryza sativa (Osa) osa821 904.m00127
Saccharomyces cerevisiae (Sce) sce6658 YPR189W
(S000006393)
Schizosaccharomyces pombe (Spo) spo4159 SPCC1919.05 O94474
Yarrowia lipolytica (Yli) yli5343 YALI0F00286g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt1g76630
GO:0005737 cytoplasm C
ISS
SpoSPCC1919.05
GO:0005829 cytosol C
IDA
SpoSPCC1919.05
GO:0043234 protein complex C
NAS
SpoSPCC1919.05
GO:0055087 Ski complex C
IDA
SceS000006393
IPI
SceS000006393
ISS
SpoSPCC1919.05
GO:0003674 molecular_function F
ND
SceS000006393
SpoSPCC1919.05
GO:0000956 nuclear-transcribed mRNA catabolic
process		 P
IMP
DmeFBgn0033376
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1919.05
GO:0008150 biological_process P
ND
AthAt1g76630
GO:0017148 negative regulation of translation P
ISS
SpoSPCC1919.05
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000006393
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IGI
SceS000006393
IMP
SceS000006393
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IMP
SceS000006393

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID		 S. cerevisiae
systematic ID
SPCC1919.05
(O94474)		 YPR189W
(S000006393)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005737 cytoplasm C
ISS
SpoSPCC1919.05
GO:0005829 cytosol C
IDA
SpoSPCC1919.05
GO:0043234 protein complex C
NAS
SpoSPCC1919.05
GO:0055087 Ski complex C
IDA
SceS000006393
IPI
SceS000006393
ISS
SpoSPCC1919.05
GO:0003674 molecular_function F
ND
SceS000006393
SpoSPCC1919.05
GO:0006402 mRNA catabolic process P
ISS
SpoSPCC1919.05
GO:0017148 negative regulation of translation P
ISS
SpoSPCC1919.05
GO:0034427 nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'		 P
IMP
SceS000006393
GO:0070478 nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated
decay		 P
IGI
SceS000006393
IMP
SceS000006393
GO:0070481 nuclear-transcribed mRNA catabolic process,
non-stop decay		 P
IMP
SceS000006393

Back to the top
YOGY Home YOGY Help

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk