Gene Expression Viewer

  • GE Viewer is visualization tool to look up gene expression profiles in different conditions.



TranscriptomeViewer


  • pombeTV is a tool for displaying tiling chip and next-generation sequencing data for genomic regions.


PInt

  • PInt (Pombe Interactome) is a tool that allows you to retrieve predictions of fission yeast protein interactions, based on more than 100 features of the proteins.


YOGY: eukarYotic OrtholoGY

  • YOGY is an integrated resource to search for orthologous proteins in 11 organisms.



PPPP: Pombe PCR Primer Programs

Web-interface scripts to design primers for PCR-based gene targeting in S. pombe

These scripts have been described in:
Penkett and Bähler (2006). Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast.
Yeast 23:921-928.


Microarray Data



Protocols



Presentations



Other scripts

These scripts are for primer design and initial microarray data processing and are available as .zip files:

These scripts have been described in:
Lyne R, Burns G, Mata J, Penkett CJ, Rustici G, Chen D, Langford C, Vetrie D, and Bähler J (2003). Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data.
BMC Genomics 4:27 (PDF).


Microarray Primer Database

  • Primer Database to retrieve the sequences and accompanying information for primers and PCR products used for our in-house arrays.


This database has been described in:
Penkett and Bähler (2006). Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast.
Yeast 23:921-928.