Gene Expression Viewer

• GE Viewer is visualization tool to look up gene expression profiles in different conditions.

TranscriptomeViewer

• pombeTV is a tool for displaying tiling chip and next-generation sequencing data for genomic regions.
  

PInt

• PInt (Pombe Interactome) is a tool that allows you to retrieve predictions of fission yeast protein interactions, based on more than 100 features of the proteins.

YOGY: eukarYotic OrtholoGY

• YOGY is an integrated resource to search for orthologous proteins in 11 organisms.

PPPP: Pombe PCR Primer Programs

Web-interface scripts to design primers for PCR-based gene targeting in S. pombe

• Gene Deletion

• C-terminal tagging

• Get primers for controlling genes by nmt promoter and/or N-terminal tagging

These scripts have been described in:
Penkett and Bähler (2006). Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast.
Yeast 23:921-928.

Microarray Data

• Meta-analysis

• Meiotic differentiation

• Stress Responses

• Cell Cycle

• Other Projects

Protocols

• Protocols we use for microarray experiments.

Presentations

• Presentations available as PDF files.

Other scripts

These scripts are for primer design and initial microarray data processing and are available as .zip files:

• Initial microarray data processing (data filtering, local normalisation and quality control)

• Intragenic Microarray Primer design

• Intergenic Microarray Primer design

These scripts have been described in:
Lyne R, Burns G, Mata J, Penkett CJ, Rustici G, Chen D, Langford C, Vetrie D, and Bähler J (2003). Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data.
BMC Genomics 4:27 (PDF).

Microarray Primer Database

• Primer Database to retrieve the sequences and accompanying information for primers and PCR products used for our in-house arrays.

This database has been described in:
Penkett and Bähler (2006). Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast.
Yeast 23:921-928.